DOSE : Disease Ontology Semantic and Enrichment analysis

Package: DOSE
Type: Package
Title: Disease Ontology Semantic and Enrichment analysis
Version: 2.10.3
Authors@R: c(person(given = "Guangchuang", family = "Yu",
email = "guangchuangyu@gmail.com",
role = c("aut", "cre")),
person(given = "Li-Gen", family = "Wang",
email = "reeganwang020@gmail.com",
role = "ctb"),
person(given = "Vladislav", family = "Petyuk",
email = "petyuk@gmail.com",
role = "ctb"),
person(given = "Giovanni", family = "Dall'Olio",
email = "giovanni.dallolio@upf.edu",
role = "ctb"))
Author: Guangchuang Yu <guangchuangyu@gmail.com> with contributions from
Li-Gen Wang, Vladislav Petyuk and Giovanni Dall'Olio.
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Description: This package implements five methods proposed by
Resnik, Schlicker, Jiang, Lin and Wang respectively
for measuring semantic similarities among DO terms and
gene products. Enrichment analyses including hypergeometric
model and gene set enrichment analysis are also implemented
for discovering disease associations of high-throughput
biological data.
Depends: R (>= 3.1.0)
Imports: AnnotationDbi, DO.db, ggplot2, GOSemSim, graphics, grDevices,
grid, igraph, methods, plyr, qvalue, reshape2, scales, stats4,
utils
Suggests: org.Hs.eg.db, clusterProfiler, knitr, BiocStyle
VignetteBuilder: knitr
License: Artistic-2.0
URL: http://guangchuangyu.github.io/DOSE
BugReports: https://github.com/GuangchuangYu/DOSE/issues
Packaged: 2016-06-15 02:56:02 UTC; biocbuild
biocViews: Annotation, Visualization, MultipleComparison,
GeneSetEnrichment, Pathways, Software
RoxygenNote: 5.0.1
NeedsCompilation: no