IPPD : Isotopic peak pattern deconvolution for Protein Mass Spectrometry by template matching

Package: IPPD
Title: Isotopic peak pattern deconvolution for Protein Mass
Spectrometry by template matching
Version: 1.20.0
Date: 2014-07-24
Author: Martin Slawski <ms@cs.uni-saarland.de>, Rene Hussong <rene.hussong@uni.lu>, Andreas Hildebrandt <andreas.hildebrandt@uni-mainz.de>, Matthias Hein <hein@cs.uni-saarland.de>
Maintainer: Martin Slawski <ms@cs.uni-saarland.de>
Depends: R (>= 2.12.0), MASS, Matrix, XML, digest, bitops
Imports: methods, stats, graphics
Description: The package provides functionality to extract isotopic peak
patterns from raw mass spectra. This is done by fitting a large set of
template basis functions to the raw spectrum using either nonnegative least
squares or least absolute deviation fittting. The
package offers a flexible function which
tries to estimate model parameters in a way tailored to the peak shapes in
the data. The package also provides functionality to process LCMS runs.
License: GPL (version 2 or later)
Collate: classes.R methods.R getPeaklist.R fitModelParameters.R
internals.R analyzeLCMS.R read.mzXML.R sweepline.R
biocViews: Proteomics
Packaged: 2016-05-04 03:52:34 UTC; biocbuild
NeedsCompilation: yes