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Package: MSnID
Type: Package
Title: Utilities for Exploration and Assessment of Confidence of LC-MSn
Proteomics Identifications.
Version: 1.6.0
Author: Vlad Petyuk with contributions from Laurent Gatto
Maintainer: Vlad Petyuk <petyuk@gmail.com>
Description: Extracts MS/MS ID data from mzIdentML (leveraging mzID package) or
text files. After collating the search results from multiple datasets it
assesses their identification quality and optimize filtering criteria to
achieve the maximum number of identifications while not exceeding a
specified false discovery rate. Also contains a number of utilities to
explore the MS/MS results and assess missed and irregular enzymatic
cleavages, mass measurement accuracy, etc.
License: Artistic-2.0
Depends: R (>= 2.10), Rcpp
Imports: MSnbase (>= 1.12.1), mzID (>= 1.3.5), R.cache, foreach,
doParallel, parallel, reshape2, methods, iterators, data.table,
Biobase, ProtGenerics
Suggests: BiocStyle, msmsTests, ggplot2, RUnit, BiocGenerics
LazyData: yes
biocViews: Proteomics, MassSpectrometry
NeedsCompilation: no
Packaged: 2016-05-04 05:46:21 UTC; biocbuild
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providing 
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