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Package: RNAinteract
Type: Package
Title: Estimate Pairwise Interactions from multidimensional features
Version: 1.20.0
Author: Bernd Fischer <b.fischer@dkfz.de>
Maintainer: Bernd Fischer <b.fischer@dkfz.de>
Description: RNAinteract estimates genetic interactions from
multi-dimensional read-outs like features extracted from
images. The screen is assumed to be performed in multi-well
plates or similar designs. Starting from a list of features
(e.g. cell number, area, fluorescence intensity) per well,
genetic interactions are estimated. The packages provides
functions for reporting interacting gene pairs, plotting
heatmaps and double RNAi plots. An HTML report can be written
for quality control and analysis.
License: Artistic-2.0
LazyLoad: yes
Imports: RColorBrewer, ICS, ICSNP, cellHTS2, geneplotter, gplots, grid,
hwriter, lattice, latticeExtra, limma, methods, splots (>=
1.13.12)
Depends: R (>= 2.12.0), abind, locfit, Biobase
biocViews: CellBasedAssays, QualityControl, Preprocessing,
Visualization
NeedsCompilation: no
Packaged: 2016-05-04 03:58:42 UTC; biocbuild
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providing 
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