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Package: SeqArray
Type: Package
Title: Big Data Management of Whole-genome Sequence Variant Calls
Version: 1.12.5
Date: 2016-06-12
Depends: R (>= 3.3.0), gdsfmt (>= 1.8.0)
Imports: methods, S4Vectors, IRanges, GenomicRanges,
SummarizedExperiment, Biostrings, VariantAnnotation
LinkingTo: gdsfmt
Suggests: parallel, digest, crayon, RUnit, BiocGenerics, knitr, Rcpp,
SNPRelate
Authors@R: c(person("Xiuwen", "Zheng", role=c("aut", "cre"),
email="zhengx@u.washington.edu"),
person("Stephanie", "Gogarten", role="aut",
email="sdmorris@u.washington.edu"),
person("Cathy", "Laurie", role="ctb"))
Description: Big data management of whole-genome sequence variant calls with
thousands of individuals: genotypic data (e.g., SNVs, indels and
structural variation calls) and annotations in GDS files are stored
in an array-oriented and compressed manner, with efficient data access
using the R programming language.
License: GPL-3
VignetteBuilder: knitr
ByteCompile: TRUE
URL: http://github.com/zhengxwen/SeqArray
BugReports: http://github.com/zhengxwen/SeqArray/issues
biocViews: Infrastructure, Sequencing, Genetics
NeedsCompilation: yes
Packaged: 2016-06-14 03:44:03 UTC; biocbuild
Author: Xiuwen Zheng [aut, cre],
Stephanie Gogarten [aut],
Cathy Laurie [ctb]
Maintainer: Xiuwen Zheng <zhengx@u.washington.edu>
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providing 
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