SomaticSignatures : Somatic Signatures

Package: SomaticSignatures
Type: Package
Title: Somatic Signatures
Version: 2.8.4
Author: Julian Gehring
Maintainer: Julian Gehring <jg-bioc@gmx.com>
Description: The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs). It provides a infrastructure related to the methodology described in Nik-Zainal (2012, Cell), with flexibility in the matrix decomposition algorithms.
URL: https://github.com/juliangehring/SomaticSignatures
Imports: S4Vectors, IRanges, GenomeInfoDb, Biostrings, ggplot2, ggbio,
reshape2, NMF, pcaMethods, Biobase, methods, proxy
Depends: R (>= 3.1.0), VariantAnnotation, GenomicRanges
Suggests: testthat, knitr, parallel,
BSgenome.Hsapiens.1000genomes.hs37d5, SomaticCancerAlterations,
ggdendro, fastICA, sva
VignetteBuilder: knitr
ByteCompile: TRUE
License: MIT + file LICENSE
BugReports: https://support.bioconductor.org
LazyLoad: yes
biocViews: Sequencing, SomaticMutation, Visualization, Clustering,
GenomicVariation, StatisticalMethod
NeedsCompilation: no
Packaged: 2016-06-19 04:14:59 UTC; biocbuild