|
Package: charm
Type: Package
Title: Analysis of DNA methylation data from CHARM microarrays
Version: 2.18.0
Date: 2016-03-28
Author: Martin Aryee, Peter Murakami, Harris Jaffee, Rafael Irizarry
Maintainer: Peter Murakami <pmurakam@jhu.edu>
Depends: R (>= 2.14.0), Biobase, SQN, fields, RColorBrewer, genefilter
Imports: BSgenome, Biobase, oligo (>= 1.11.31), oligoClasses (>=
1.17.39), ff, preprocessCore, methods, stats, Biostrings,
IRanges, siggenes, nor1mix, gtools, grDevices, graphics, utils,
limma, parallel, sva (>= 3.1.2)
Suggests: charmData, BSgenome.Hsapiens.UCSC.hg18, corpcor
Description: This package implements analysis tools for DNA methylation
data generated using Nimblegen microarrays and the McrBC
protocol. It finds differentially methylated regions between
samples, calculates percentage methylation estimates and
includes array quality assessment tools.
License: LGPL (>= 2)
LazyLoad: yes
biocViews: Microarray, DNAMethylation
NeedsCompilation: no
Packaged: 2016-05-04 03:39:37 UTC; biocbuild
|
providing 
.