crlmm : Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.

Package: crlmm
Type: Package
Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for
Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
Version: 1.30.0
Author: Benilton S Carvalho, Robert Scharpf, Matt Ritchie, Ingo
Ruczinski, Rafael A Irizarry
Maintainer: Benilton S Carvalho <benilton@unicamp.br>,
Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie
<mritchie@wehi.EDU.AU>
Description: Faster implementation of CRLMM specific to SNP 5.0 and 6.0
arrays, as well as a copy number tool specific to 5.0, 6.0, and
Illumina platforms
License: Artistic-2.0
Depends: R (>= 2.14.0), oligoClasses (>= 1.21.12), preprocessCore (>=
1.17.7)
LinkingTo: preprocessCore (>= 1.17.7)
Imports: methods, Biobase (>= 2.15.4), BiocGenerics, affyio (>=
1.23.2), illuminaio, ellipse, mvtnorm, splines, stats, SNPchip,
utils, lattice, ff, foreach, RcppEigen (>= 0.3.1.2.1),
matrixStats, VGAM, parallel
Suggests: hapmapsnp6, genomewidesnp6Crlmm (>= 1.0.7), GGdata, snpStats,
RUnit
Collate: AllGenerics.R AllClasses.R methods-AssayData.R methods-CNSet.R
methods-CNSetLM.R methods-eSet.R methods-SnpSuperSet.R
methods-PredictionRegion.R cnrma-functions.R cnset-accessors.R
crlmm-functions.R crlmmGT2.R crlmm-illumina.R krlmm.R
snprma-functions.R utils.R zzz.R test_crlmm_package.R
LazyLoad: yes
## Local Variables:
## time-stamp-pattern: "8/Date: %3a %3b %2d %02H:%02M:%02S %Z %:y\n"
## End:
biocViews: Microarray, Preprocessing, SNP, CopyNumberVariation
NeedsCompilation: yes
Packaged: 2016-05-04 03:14:37 UTC; biocbuild