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Package: dendsort
Type: Package
Title: Modular Leaf Ordering Methods for Dendrogram Nodes
Version: 0.3.3
Date: 2015-12-14
Author: Ryo Sakai
Maintainer: Ryo Sakai <ryo@vda-lab.be>
Description: An implementation of functions to optimize ordering of nodes in
a dendrogram, without affecting the meaning of the dendrogram. A dendrogram can
be sorted based on the average distance of subtrees, or based on the smallest
distance value. These sorting methods improve readability and interpretability
of tree structure, especially for tasks such as comparison of different distance
measures or linkage types and identification of tight clusters and outliers. As
a result, it also introduces more meaningful reordering for a coupled heatmap
visualization.
License: GPL-2 | GPL-3
URL: https://bitbucket.org/vda-lab/dendsort/,
http://f1000research.com/articles/3-177/v1
Suggests: knitr, RColorBrewer, gplots, heatmap.plus, seriation, gapmap
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2015-12-14 09:55:50 UTC; ryosakai
Repository: CRAN
Date/Publication: 2015-12-14 12:39:17
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providing 
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