rTANDEM : Interfaces the tandem protein identification algorithm in R

Package: rTANDEM
Type: Package
Title: Interfaces the tandem protein identification algorithm in R
Version: 1.12.0
Date: 2014-03-31
SystemRequirements: rTANDEM uses expat and pthread libraries. See the
README file for details.
Author@R: c(person("Frederic", "Fournier",
email="frederic.fournier@crchuq.ulaval.ca"), person("Charles",
"Joly Beauparlant", email="charles.joly-b@crchul.ulaval.ca"),
person("Rene Paradis", email="rene.paradis@genome.ulaval.ca"),
person("Arnaud", "Droit",
email="arnaud.droit@crchuq.ulaval.ca"))
Author: Frederic Fournier <frederic.fournier@crchuq.ulaval.ca>, Charles Joly Beauparlant <charles.joly-beauparlant@crchul.ulaval.ca>, Rene Paradis <rene.paradis@genome.ulaval.ca>, Arnaud Droit <arnaud.droit@crchuq.ulaval.ca>
Maintainer: Frederic Fournier <frederic.fournier@crchuq.ulaval.ca>
Description: This package interfaces the tandem protein identification algorithm in R. Identification can be launched in the X!Tandem style, by using as sole parameter the path to a parameter file. But rTANDEM aslo provides extended syntax and functions to streamline launching analyses, as well as function to convert results, parameters and taxonomy to/from R. A related package, shinyTANDEM, provides visualization interface for result objects.
biocViews: MassSpectrometry, Proteomics
License: Artistic-1.0 | file LICENSE
Imports: methods
Depends: XML, Rcpp, data.table (>= 1.8.8)
Suggests: biomaRt
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2016-05-05 03:44:22 UTC; biocbuild