R: An example ACME data structure of class ACMESet
example.agff
R Documentation
An example ACME data structure of class ACMESet
Description
An ACMESet data structure from two Nimblegen arrays, custom tiled to
include multiple HOX genes.
Usage
data(example.agff)
Format
The format is:
chr "example.agff"
Source
From Scacheri et al., Plot Genet, 2006. Pubmed ID 16604156
Examples
data(example.agff)
example.agff
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
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> library(ACME)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/ACME/example.agff.Rd_%03d_medium.png", width=480, height=480)
> ### Name: example.agff
> ### Title: An example ACME data structure of class ACMESet
> ### Aliases: example.agff
> ### Keywords: datasets
>
> ### ** Examples
>
> data(example.agff)
> example.agff
ACMESet (storageMode: lockedEnvironment)
assayData: 190181 features, 2 samples
element names: exprs
protocolData: none
phenoData
sampleNames: testsamp1 testsamp2
varLabels: fullfnames
varMetadata: labelDescription
featureData
featureNames: 74065 74066 ... 103913 (190181 total)
fvarLabels: chromosome source ... comment (8 total)
fvarMetadata: labelDescription
experimentData: use 'experimentData(object)'
Annotation:
>
>
>
>
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> dev.off()
null device
1
>