Example data.frame representing reporter information

Description

The reporter object is a 500 by 1 data frame. The rows represent the 500 probe IDs in the geneData data. The values in reporter are the predefined probe types for the probes. reporter is used in conjunction with the geneData object and its associates.

Usage

data(reporter)

Format

A 500 by 1 data frame

Details

There are 10 predefined probe types:

• AFFX- Quality Control (QC)

• _f_ SequenceFamily

• _g_ CommonGroups

• _s_ SimilarityConstraint

• _r_ RulesDropped

• _i_ Incomplete

• _b_ AmbiguousProbeSet

• _l_ LongProbeSet

• _at AntiSenseTarget

• _st SenseTarget

Source

Affymetrix GeneChip Expression Analysis Data Analysis Fundamentals (http://www.affymetrix.com/Auth/support/downloads/manuals/data_analysis_fundamentals_manual.pdf)

Examples

data(reporter)
## maybe str(reporter) ; plot(reporter) ...

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
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> library(Biobase)
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/Biobase/data.reporter.Rd_%03d_medium.png", width=480, height=480)
> ### Name: reporter
> ### Title: Example data.frame representing reporter information
> ### Aliases: data:reporter reporter
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(reporter)
> ## maybe str(reporter) ; plot(reporter) ...
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>