TSS annotation for human sapiens (GRCh38) obtained from biomaRt

Description

TSS annotation for human sapiens (GRCh38) obtained from biomaRt

Usage

data(TSS.human.GRCh38)

Format

A 'GRanges' [package "GenomicRanges"] object with ensembl id as names.

Details

used in the examples Annotation data obtained by:

mart = useMart(biomart = "ensembl", dataset = "hsapiens_gene_ensembl")

getAnnotation(mart, featureType = "TSS")

Examples

data(TSS.human.GRCh38)
slotNames(TSS.human.GRCh38)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(ChIPpeakAnno)
Loading required package: grid
Loading required package: IRanges
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: Biostrings
Loading required package: XVector
Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Loading required package: VennDiagram
Loading required package: futile.logger

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/ChIPpeakAnno/TSS.human.GRCh38.Rd_%03d_medium.png", width=480, height=480)
> ### Name: TSS.human.GRCh38
> ### Title: TSS annotation for human sapiens (GRCh38) obtained from biomaRt
> ### Aliases: TSS.human.GRCh38
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(TSS.human.GRCh38)
> slotNames(TSS.human.GRCh38)
[1] "seqnames"        "ranges"          "strand"          "elementMetadata"
[5] "seqinfo"         "metadata"       
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>