Example data object with a number of output control MPs run on it, and includes resulting distributions of TACs
Usage
data("ourReefFish")
Format
The format is:
Formal class 'DLM_data' [package "DLMtool"] with 71 slots
..@ Name : chr "ourReefFish"
..@ Year : num [1:55] 1954 1955 1956 1957 1958 ...
..@ Cat : num [1, 1:55] 1.33 1.46 1.66 1.56 2.23 ...
..@ Ind : num [1, 1:55] 0.163 0.138 0.148 0.157 0.146 ...
..@ Rec : num [1, 1:55] NA NA NA NA NA NA NA NA NA NA ...
..@ t : num 54
..@ AvC : num 1.84
..@ Dt : num 0.545
..@ Mort : num 0.094
..@ FMSY_M : num 0.7
..@ BMSY_B0 : num 0.3
..@ Cref : num NA
..@ Bref : num NA
..@ Iref : num NA
..@ L50 : num 31.6
..@ L95 : num 52.5
..@ LFC : num 20
..@ LFS : num 36
..@ CAA : num [1, 1:21, 1:48] 0 0 0 0 0 0 0 0 0 0 ...
..@ Dep : num 0.2
..@ Abun : num NA
..@ vbK : num 0.192
..@ vbLinf : num 85.6
..@ vbt0 : num -0.395
..@ wla : num 0.0000167
..@ wlb : num 2.95
..@ steep : num 0.99
..@ CV_Cat : num 0.2
..@ CV_Dt : num 0.25
..@ CV_AvC : num 0.2
..@ CV_Ind : num 0.2
..@ CV_Mort : num 0.2
..@ CV_FMSY_M : num 0.2
..@ CV_BMSY_B0: num 0.045
..@ CV_Cref : num 0.2
..@ CV_Bref : num 0.2
..@ CV_Iref : num 0.2
..@ CV_Rec : num 0.2
..@ CV_Dep : num 0.25
..@ CV_Abun : num 0.25
..@ CV_vbK : num 0.00803
..@ CV_vbLinf : num 0.00325
..@ CV_vbt0 : num 0.00777
..@ CV_L50 : num 0.1
..@ CV_LFC : num 0.2
..@ CV_LFS : num 0.2
..@ CV_wla : num 0.1
..@ CV_wlb : num 0.1
..@ CV_steep : num 0.1
..@ sigmaL : num 0.2
..@ MaxAge : num 48
..@ Units : chr "thousand tonnes"
..@ Ref : num NA
..@ Ref_type : chr NA
..@ Log :List of 1
.. ..$ : chr "Created: 2016-02-18 14:28:11"
..@ params : list()
..@ PosMPs : chr [1:31] "AvC" "BK_CC" "BK_ML" "CC1" ...
..@ MPs : chr [1:31] "AvC" "BK_CC" "BK_ML" "CC1" ...
..@ OM :'data.frame': 1 obs. of 1 variable:
.. ..$ NA.: logi NA
..@ Obs :'data.frame': 1 obs. of 1 variable:
.. ..$ NA.: logi NA
..@ TAC : num [1:31, 1:100, 1] 1.36 15.91 1.14 3.08 1.77 ...
..@ TACbias : logi [1, 1, 1] NA
..@ Sense : logi [1, 1, 1] NA
..@ CAL_bins : num [1:44] 0 20 22 24 26 28 30 32 34 36 ...
..@ CAL : num [1, 1:28, 1:43] 0 0 2 1 0 1 0 0 0 0 ...
..@ MPrec : num NA
..@ MPeff : num NA
..@ ML : num [1, 1:55] NA NA NA NA NA NA NA NA NA NA ...
..@ Lbar : num [1, 1:55] NA NA NA NA NA NA NA NA NA NA ...
..@ Lc : num [1, 1:55] NA NA NA NA NA NA NA NA NA NA ...
..@ LHYear : num 2008
..@ Misc : list()
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(DLMtool)
Loading required package: snowfall
Loading required package: snow
Loading required package: boot
Loading required package: MASS
Loading required package: parallel
Attaching package: 'parallel'
The following objects are masked from 'package:snow':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, clusterSplit, makeCluster, parApply,
parCapply, parLapply, parRapply, parSapply, splitIndices,
stopCluster
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/DLMtool/ourReefFish.Rd_%03d_medium.png", width=480, height=480)
> ### Name: ourReefFish
> ### Title: Example data object
> ### Aliases: ourReefFish
> ### Keywords: datasets
>
> ### ** Examples
>
> data(ourReefFish)
> str(ourReefFish) ;
Formal class 'DLM_data' [package "DLMtool"] with 72 slots
..@ Name : chr "ourReefFish"
..@ Year : num [1:55] 1954 1955 1956 1957 1958 ...
..@ Cat : num [1, 1:55] 1.33 1.46 1.66 1.56 2.23 ...
..@ Ind : num [1, 1:55] 0.163 0.138 0.148 0.157 0.146 ...
..@ Rec : num [1, 1:55] NA NA NA NA NA NA NA NA NA NA ...
..@ t : num 54
..@ AvC : num 1.84
..@ Dt : num 0.545
..@ Mort : num 0.094
..@ FMSY_M : num 0.7
..@ BMSY_B0 : num 0.3
..@ Cref : num NA
..@ Bref : num NA
..@ Iref : num NA
..@ L50 : num 31.6
..@ L95 : num 52.5
..@ LFC : num 20
..@ LFS : num 36
..@ CAA : num [1, 1:21, 1:48] 0 0 0 0 0 0 0 0 0 0 ...
..@ Dep : num 0.2
..@ Abun : num NA
..@ vbK : num 0.192
..@ vbLinf : num 85.6
..@ vbt0 : num -0.395
..@ wla : num 1.67e-05
..@ wlb : num 2.95
..@ steep : num 0.99
..@ CV_Cat : num 0.2
..@ CV_Dt : num 0.25
..@ CV_AvC : num 0.2
..@ CV_Ind : num 0.2
..@ CV_Mort : num 0.2
..@ CV_FMSY_M : num 0.2
..@ CV_BMSY_B0: num 0.045
..@ CV_Cref : num 0.2
..@ CV_Bref : num 0.2
..@ CV_Iref : num 0.2
..@ CV_Rec : num 0.2
..@ CV_Dep : num 0.25
..@ CV_Abun : num 0.25
..@ CV_vbK : num 0.00803
..@ CV_vbLinf : num 0.00325
..@ CV_vbt0 : num 0.00777
..@ CV_L50 : num 0.1
..@ CV_LFC : num 0.2
..@ CV_LFS : num 0.2
..@ CV_wla : num 0.1
..@ CV_wlb : num 0.1
..@ CV_steep : num 0.1
..@ sigmaL : num 0.2
..@ MaxAge : num 48
..@ Units : chr "thousand tonnes"
..@ Ref : num 3.12
..@ Ref_type : chr "Latest assessment"
..@ Log :List of 1
.. ..$ : chr "Created: 2016-04-06 16:21:08"
..@ params : list()
..@ PosMPs : chr [1:27] "AvC" "BK_CC" "CC1" "CC4" ...
..@ MPs : chr [1:27] "AvC" "BK_CC" "CC1" "CC4" ...
..@ OM :'data.frame': 1 obs. of 1 variable:
.. ..$ NA.: logi NA
..@ Obs :'data.frame': 1 obs. of 1 variable:
.. ..$ NA.: logi NA
..@ TAC : num [1:27, 1:100, 1] 2.31 2.73 2.4 2.16 1.83 ...
..@ TACbias : logi [1, 1, 1] NA
..@ Sense : logi [1, 1, 1] NA
..@ CAL_bins : num [1:44] 0 20 22 24 26 28 30 32 34 36 ...
..@ CAL : num [1, 1:28, 1:43] 0 0 2 1 0 1 0 0 0 0 ...
..@ MPrec : num NA
..@ MPeff : num NA
..@ ML : num [1, 1:55] NA NA NA NA NA NA NA NA NA NA ...
..@ Lbar : num [1, 1:55] NA NA NA NA NA NA NA NA NA NA ...
..@ Lc : num [1, 1:55] NA NA NA NA NA NA NA NA NA NA ...
..@ LHYear : num 2008
..@ Misc : list()
> plot(ourReefFish)
>
>
>
>
>
> dev.off()
null device
1
>
providing 
.