List of 58 candidate models to fit to data

Description

ModelSet is an example list of candidate models used in the reference below to calculate the DivE estimate

Usage

data(ModelSet)

Format

A list of 58 named functions (with named parameters). Each model in the list must be provided as a function, and must be of the following form: function(x, params) with(as.list(params), <function of params>). The parameter names are a1, a2, a3, etc. These must match the names of the parameter values given in ParamSeeds and ParamRanges.

Details

Each model is written as a function: function(x, params) with(as.list(params), <function of params>). Examples are given in the ModelSet data file as part of the DivE package. The user can amend ModelSet and input additional models as required. The analytical form of all the models provided in ModelSet can be found in the reference below, in Text S1: List of DivE candidate models. All models were obtained from zunzun.org, an online curve fitting repository

References

Laydon, D., Melamed, A., Sim, A., Gillet, N. A., Sim, K., Darko, S., Kroll, S., Douek, D. C., Price, D., Bangham, C. R. M., Asquith, B., Quantification of HTLV-1 clonality and TCR diversity, PLOS Comput. Biol. 2014

Examples

data(ModelSet)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(DivE)
Loading required package: deSolve

Attaching package: 'deSolve'

The following object is masked from 'package:graphics':

    matplot

Loading required package: FME
Loading required package: rootSolve
Loading required package: coda
Loading required package: rgeos
rgeos version: 0.3-19, (SVN revision 524)
 GEOS runtime version: 3.5.0-CAPI-1.9.0 r4084 
 Linking to sp version: 1.2-3 
 Polygon checking: TRUE 

Loading required package: sp
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/DivE/ModelSet.Rd_%03d_medium.png", width=480, height=480)
> ### Name: ModelSet
> ### Title: List of 58 candidate models to fit to data
> ### Aliases: ModelSet
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(ModelSet)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>