List of 58 sets of upper and lower bounds for models evaluated by DivE

Description

A list of 58 matrices. Each matrix corresponds to a model in ModelSet, for which it contains suggested upper and lower bounds for each parameter.

Usage

data(ParamRanges)

Format

A list of 58 matrices. Each matrix has 2 rows (lower bounds, upper bounds) and columns corresponding to the parameters of the matching model in ModelSet.

Details

There is a trade-off between specifying parameter ranges that are large enough to encompass likely fitted values for a variety of data sets, and specifying parameter ranges that are suitably small so that parameter estimation is sufficiently precise and runtime is managable. We have aimed to balance these competing concerns. The parameter ranges provided performed well in our simulations. The user can amend if required.

References

Laydon, D., Melamed, A., Sim, A., Gillet, N. A., Sim, K., Darko, S., Kroll, S., Douek, D. C., Price, D., Bangham, C. R. M., Asquith, B., Quantification of HTLV-1 clonality and TCR diversity, PLOS Comput. Biol. 2014

Examples

data(ParamRanges)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(DivE)
Loading required package: deSolve

Attaching package: 'deSolve'

The following object is masked from 'package:graphics':

    matplot

Loading required package: FME
Loading required package: rootSolve
Loading required package: coda
Loading required package: rgeos
rgeos version: 0.3-19, (SVN revision 524)
 GEOS runtime version: 3.5.0-CAPI-1.9.0 r4084 
 Linking to sp version: 1.2-3 
 Polygon checking: TRUE 

Loading required package: sp
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/DivE/ParamRanges.Rd_%03d_medium.png", width=480, height=480)
> ### Name: ParamRanges
> ### Title: List of 58 sets of upper and lower bounds for models evaluated
> ###   by DivE
> ### Aliases: ParamRanges
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(ParamRanges)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>