Gene Expression Profiles

Description

List containing ranked lists of gene expression and associated p-values for a set of profiles.

Usage

data(profiles)

Format

List containing rank of differential gene expression and pvalues in a list. Each item in the list contains a matrix. Matrix has number of rows equal number genes and columns for the different profiles.

Source

http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-22528

Examples

data(profiles)
## maybe str(profiles) ; plot(profiles) ...

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(DrugVsDisease)
Loading required package: affy
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: limma

Attaching package: 'limma'

The following object is masked from 'package:BiocGenerics':

    plotMA

Loading required package: biomaRt
Loading required package: ArrayExpress
Loading required package: GEOquery
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Loading required package: DrugVsDiseasedata
Loading required package: cMap2data

Attaching package: 'cMap2data'

The following object is masked from 'package:DrugVsDiseasedata':

    genelist

Loading required package: qvalue
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/DrugVsDisease/profiles.Rd_%03d_medium.png", width=480, height=480)
> ### Name: profiles
> ### Title: Gene Expression Profiles
> ### Aliases: profiles
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(profiles)
> ## maybe str(profiles) ; plot(profiles) ...
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>