List: Differential gene expression and p-values

Description

Ranklist which has the rank of each gene according to differential expression. P-values is the second element in the list containing the associated p-value for gene differential expression.

Usage

data(selprofile)

Format

List with two elements, the first ranklist containing the ranked position of the gene according to its differential expression. The second item in the list is the associated pvalues.

Details

Example ranked list of differential expression. Taken from Array express experiment E-GEOD-22528

Source

http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-22528

Examples

data(selprofile)

## maybe str(selprofile) ; plot(selprofile) ...

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(DrugVsDisease)
Loading required package: affy
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: limma

Attaching package: 'limma'

The following object is masked from 'package:BiocGenerics':

    plotMA

Loading required package: biomaRt
Loading required package: ArrayExpress
Loading required package: GEOquery
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Loading required package: DrugVsDiseasedata
Loading required package: cMap2data

Attaching package: 'cMap2data'

The following object is masked from 'package:DrugVsDiseasedata':

    genelist

Loading required package: qvalue
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/DrugVsDisease/selprofile.Rd_%03d_medium.png", width=480, height=480)
> ### Name: selprofile
> ### Title: List: Differential gene expression and p-values
> ### Aliases: selprofile
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(selprofile)
> 
> ## maybe str(selprofile) ; plot(selprofile) ...
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>