in-silico 100*100 Hi-C contact matrix with with 5% noise

Description

in-silico distances were computed from the random configuration conf. A power law model was then used to generate matching in-silico Hi-C frequencies. Random Noise was further added to long range frequencies to mimic a typical situation for Hi-C data. The resulting frequencies were then used to construct this matrix.

Usage

data(hic)

Details

This data structure is used to illustrate the usage of calibrate.

References

Y. Shavit, F.K. Hamey, P. Lio', FisHiCal: an R package for iterative FISH-based calibration of Hi-C data, 2014 (submitted).

Results