FourC object with z-scores

Description

This file contains the FourCSeq object fcf. For this object z-scores have been calculated. (See ?getZScores or the vignette of the 'FourCSeq' package for details).

Usage

data(fcf)

Format

Formal class 'FourC' [package "FourCSeq"]

Examples

data(fcf)
fcf

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(FourCSeq)
Loading required package: GenomicRanges
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: ggplot2
Loading required package: DESeq2
Loading required package: SummarizedExperiment
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: splines
Loading required package: LSD
Warning message:
replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'ggbio' 
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/FourCSeq/fcf.Rd_%03d_medium.png", width=480, height=480)
> ### Name: fcf
> ### Title: FourC object with z-scores
> ### Aliases: fcf
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(fcf)
> fcf
class: FourC 
dim: 1872 6 
metadata(9): projectPath fragmentDir ... parameter peakParameter
assays(11): counts countsLeftFragmentEnd ... pAdjusted peaks
rownames: NULL
rowData names(22): leftSize rightSize ... dispOutlier dispMAP
colnames(6): ap_WE_68h_1 ap_WE_68h_2 ... ap_WE_34h_1 ap_WE_34h_2
colData names(23): viewpoint condition ... sizeFactor sd
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>