Supported by Dr. Osamu Ogasawara and  providing  . |
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Last data update: 2014.03.03 |
Cytogenetic bandingDescriptionCytogenetic banding Usagedata(cytoband) Examplesdata(cytoband) cytoband Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(GLAD)
######################################################################################
Have fun with GLAD
For smoothing it is possible to use either
the AWS algorithm (Polzehl and Spokoiny, 2002,
or the HaarSeg algorithm (Ben-Yaacov and Eldar, Bioinformatics, 2008,
If you use the package with AWS, please cite:
Hupe et al. (Bioinformatics, 2004, and Polzehl and Spokoiny (2002,
If you use the package with HaarSeg, please cite:
Hupe et al. (Bioinformatics, 2004, and (Ben-Yaacov and Eldar, Bioinformatics, 2008,
For fast computation it is recommanded to use
the daglad function with smoothfunc=haarseg
######################################################################################
New options are available in daglad: see help for details.
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/GLAD/cytoband.Rd_%03d_medium.png", width=480, height=480)
> ### Name: cytoband
> ### Title: Cytogenetic banding
> ### Aliases: cytoband
> ### Keywords: datasets
>
> ### ** Examples
>
> data(cytoband)
> cytoband
Chromosome Band Start End Centro Color ChrNumeric
1 1 p36.3 0 7100000 0 5 1
2 1 p36.2 7100000 15600000 0 4 1
3 1 p36.1 15600000 27700000 0 5 1
4 1 p35 27700000 34300000 0 4 1
5 1 p34.3 34300000 39800000 0 5 1
6 1 p34.2 39800000 43800000 0 4 1
7 1 p34.1 43800000 46500000 0 5 1
8 1 p33 46500000 50400000 0 2 1
9 1 p32 50400000 60100000 0 5 1
10 1 p31 60100000 84600000 0 3 1
11 1 p22 84600000 94500000 0 5 1
12 1 p21 94500000 106900000 0 2 1
13 1 p13 106900000 117500000 0 5 1
14 1 p12 117500000 120300000 0 3 1
15 1 p11 120300000 124200000 1 6 1
16 1 q11 124200000 127900000 1 6 1
17 1 q12 127900000 141600000 0 7 1
18 1 q21 141600000 151400000 0 5 1
19 1 q22 151400000 153400000 0 3 1
20 1 q23 153400000 162300000 0 5 1
21 1 q24 162300000 169700000 0 3 1
22 1 q25 169700000 182500000 0 5 1
23 1 q31 182500000 196000000 0 1 1
24 1 q32 196000000 210500000 0 5 1
25 1 q41 210500000 219800000 0 1 1
26 1 q42 219800000 232900000 0 5 1
27 1 q43 232900000 239500000 0 2 1
28 1 q44 239500000 245522847 0 5 1
29 10 p15 0 6700000 0 5 10
30 10 p14 6700000 12300000 0 2 10
31 10 p13 12300000 17300000 0 5 10
32 10 p12 17300000 29400000 0 2 10
33 10 p11.2 29400000 38800000 0 5 10
34 10 p11.1 38800000 40300000 1 6 10
35 10 q11.1 40300000 41900000 1 6 10
36 10 q11.2 41900000 52600000 0 5 10
37 10 q21 52600000 70300000 0 1 10
38 10 q22 70300000 82900000 0 5 10
39 10 q23 82900000 97000000 0 1 10
40 10 q24 97000000 105700000 0 5 10
41 10 q25 105700000 118700000 0 1 10
42 10 q26 118700000 135413628 0 5 10
43 11 p15 0 21600000 0 5 11
44 11 p14 21600000 31000000 0 1 11
45 11 p13 31000000 36400000 0 5 11
46 11 p12 36400000 43400000 0 1 11
47 11 p11.2 43400000 48800000 0 5 11
48 11 p11.1 48800000 52900000 1 6 11
49 11 q11 52900000 56700000 1 6 11
50 11 q12 56700000 63100000 0 2 11
51 11 q13 63100000 77400000 0 5 11
52 11 q14 77400000 92100000 0 1 11
53 11 q21 92100000 96400000 0 5 11
54 11 q22 96400000 110000000 0 1 11
55 11 q23 110000000 121200000 0 5 11
56 11 q24 121200000 130300000 0 3 11
57 11 q25 130300000 134452384 0 5 11
58 12 p13 0 14700000 0 5 12
59 12 p12 14700000 26400000 0 1 12
60 12 p11.2 26400000 33200000 0 5 12
61 12 p11.1 33200000 35400000 1 6 12
62 12 q11 35400000 36500000 1 6 12
63 12 q12 36500000 44600000 0 1 12
64 12 q13 44600000 56300000 0 5 12
65 12 q14 56300000 66100000 0 2 12
66 12 q15 66100000 70100000 0 5 12
67 12 q21 70100000 91200000 0 2 12
68 12 q22 91200000 94700000 0 5 12
69 12 q23 94700000 107500000 0 2 12
70 12 q24.1 107500000 112800000 0 5 12
71 12 q24.2 112800000 119300000 0 3 12
72 12 q24.3 119300000 132449811 0 5 12
73 13 p13 0 3800000 0 10 13
74 13 p12 3800000 8300000 0 9 13
75 13 p11.2 8300000 13500000 0 8 13
76 13 p11.1 13500000 16000000 1 6 13
77 13 q11 16000000 18400000 1 6 13
78 13 q12 18400000 31100000 0 5 13
79 13 q13 31100000 39000000 0 3 13
80 13 q14 39000000 54200000 0 5 13
81 13 q21 54200000 72100000 0 1 13
82 13 q22 72100000 77900000 0 5 13
83 13 q31 77900000 93800000 0 1 13
84 13 q32 93800000 100500000 0 5 13
85 13 q33 100500000 109100000 0 1 13
86 13 q34 109100000 114142980 0 5 13
87 14 p13 0 3100000 0 10 14
88 14 p12 3100000 6700000 0 9 14
89 14 p11.2 6700000 13600000 0 8 14
90 14 p11.1 13600000 15600000 1 6 14
91 14 q11.1 15600000 19000000 1 6 14
92 14 q11.2 19000000 24300000 0 5 14
93 14 q12 24300000 32400000 0 1 14
94 14 q13 32400000 36900000 0 5 14
95 14 q21 36900000 50100000 0 1 14
96 14 q22 50100000 57200000 0 5 14
97 14 q23 57200000 67000000 0 2 14
98 14 q24 67000000 78400000 0 5 14
99 14 q31 78400000 88100000 0 1 14
100 14 q32 88100000 106368585 0 5 14
101 15 p13 0 3500000 0 10 15
102 15 p12 3500000 7900000 0 9 15
103 15 p11.2 7900000 14100000 0 8 15
104 15 p11.1 14100000 17000000 1 6 15
105 15 q11.1 17000000 18300000 1 6 15
106 15 q11.2 18300000 23200000 0 5 15
107 15 q12 23200000 25700000 0 3 15
108 15 q13 25700000 31400000 0 5 15
109 15 q14 31400000 37900000 0 2 15
110 15 q15 37900000 42600000 0 5 15
111 15 q21 42600000 57000000 0 2 15
112 15 q22 57000000 65300000 0 5 15
113 15 q23 65300000 70400000 0 4 15
114 15 q24 70400000 76100000 0 5 15
115 15 q25 76100000 86900000 0 3 15
116 15 q26 86900000 100338915 0 5 15
117 16 p13.3 0 6300000 0 5 16
118 16 p13.2 6300000 10300000 0 3 16
119 16 p13.1 10300000 16700000 0 5 16
120 16 p12 16700000 27600000 0 3 16
121 16 p11.2 27600000 34400000 0 5 16
122 16 p11.1 34400000 38200000 1 6 16
123 16 q11.1 38200000 40700000 1 6 16
124 16 q11.2 40700000 45500000 0 7 16
125 16 q12.1 45500000 51200000 0 5 16
126 16 q12.2 51200000 55300000 0 3 16
127 16 q13 55300000 56700000 0 5 16
128 16 q21 56700000 63900000 0 1 16
129 16 q22 63900000 73800000 0 5 16
130 16 q23 73800000 82700000 0 2 16
131 16 q24 82700000 88827254 0 5 16
132 17 p13 0 10700000 0 5 17
133 17 p12 10700000 15900000 0 2 17
134 17 p11.2 15900000 22100000 0 5 17
135 17 p11.1 22100000 22200000 1 6 17
136 17 q11.1 22200000 22800000 1 6 17
137 17 q11.2 22800000 28800000 0 5 17
138 17 q12 28800000 35200000 0 3 17
139 17 q21 35200000 47500000 0 5 17
140 17 q22 47500000 50900000 0 2 17
141 17 q23 50900000 59900000 0 5 17
142 17 q24 59900000 68400000 0 3 17
143 17 q25 68400000 78774742 0 5 17
144 18 p11.3 0 7200000 0 5 18
145 18 p11.2 7200000 15400000 0 5 18
146 18 p11.1 15400000 16100000 1 6 18
147 18 q11.1 16100000 17300000 1 6 18
148 18 q11.2 17300000 23300000 0 5 18
149 18 q12 23300000 41800000 0 1 18
150 18 q21 41800000 59800000 0 5 18
151 18 q22 59800000 71300000 0 1 18
152 18 q23 71300000 76117153 0 5 18
153 19 p13.3 0 6900000 0 5 19
154 19 p13.2 6900000 12600000 0 4 19
155 19 p13.1 12600000 19800000 0 5 19
156 19 p12 19800000 26700000 0 7 19
157 19 p11 26700000 28500000 1 6 19
158 19 q11 28500000 30200000 1 6 19
159 19 q12 30200000 37100000 0 7 19
160 19 q13.1 37100000 43400000 0 5 19
161 19 q13.2 43400000 48100000 0 4 19
162 19 q13.3 48100000 56000000 0 5 19
163 19 q13.4 56000000 63811651 0 4 19
164 2 p25 0 12100000 0 5 2
165 2 p24 12100000 24000000 0 2 2
166 2 p23 24000000 32000000 0 5 2
167 2 p22 32000000 41700000 0 2 2
168 2 p21 41700000 47700000 0 5 2
169 2 p16 47700000 61200000 0 1 2
170 2 p15 61200000 64000000 0 5 2
171 2 p14 64000000 68500000 0 3 2
172 2 p13 68500000 75000000 0 5 2
173 2 p12 75000000 83300000 0 1 2
174 2 p11.2 83300000 91000000 0 5 2
175 2 p11.1 91000000 93400000 1 6 2
176 2 q11.1 93400000 95800000 1 6 2
177 2 q11.2 95800000 102600000 0 5 2
178 2 q12 102600000 108700000 0 3 2
179 2 q13 108700000 113900000 0 5 2
180 2 q14.1 113900000 118600000 0 3 2
181 2 q14.2 118600000 122100000 0 5 2
182 2 q14.3 122100000 129600000 0 3 2
183 2 q21 129600000 137400000 0 5 2
184 2 q22 137400000 148500000 0 1 2
185 2 q23 148500000 154700000 0 5 2
186 2 q24 154700000 169600000 0 2 2
187 2 q31 169600000 182800000 0 5 2
188 2 q32.1 182800000 189200000 0 2 2
189 2 q32.2 189200000 191800000 0 5 2
190 2 q32.3 191800000 197300000 0 2 2
191 2 q33 197300000 208900000 0 5 2
192 2 q34 208900000 215200000 0 1 2
193 2 q35 215200000 221400000 0 5 2
194 2 q36 221400000 230800000 0 2 2
195 2 q37 230800000 243018229 0 5 2
196 20 p13 0 5000000 0 5 20
197 20 p12.3 5000000 17800000 0 2 20
198 20 p11.2 17800000 25700000 0 5 20
199 20 p11.1 25700000 27100000 1 6 20
200 20 q11.1 27100000 28400000 1 6 20
201 20 q11.2 28400000 37100000 0 5 20
202 20 q12 37100000 41100000 0 2 20
203 20 q13.1 41100000 49200000 0 5 20
204 20 q13.2 49200000 53500000 0 2 20
205 20 q13.3 53500000 62435964 0 5 20
206 21 p13 0 2900000 0 10 21
207 21 p12 2900000 6300000 0 9 21
208 21 p11.2 6300000 10000000 0 8 21
209 21 p11.1 10000000 12300000 1 6 21
210 21 q11.1 12300000 13200000 1 6 21
211 21 q11.2 13200000 15300000 0 5 21
212 21 q21 15300000 30500000 0 1 21
213 21 q22 30500000 46944323 0 5 21
214 22 p13 0 3000000 0 10 22
215 22 p12 3000000 6600000 0 9 22
216 22 p11.2 6600000 9600000 0 8 22
217 22 p11.1 9600000 11800000 1 6 22
218 22 q11.1 11800000 16300000 1 6 22
219 22 q11.2 16300000 24300000 0 5 22
220 22 q12 24300000 35800000 0 3 22
221 22 q13 35800000 49554710 0 5 22
222 3 p26 0 8200000 0 3 3
223 3 p25 8200000 16400000 0 5 3
224 3 p24 16400000 32200000 0 1 3
225 3 p23 32200000 35000000 0 5 3
226 3 p22 35000000 43600000 0 3 3
227 3 p21 43600000 54400000 0 5 3
228 3 p14 54400000 69900000 0 3 3
229 3 p13 69900000 74200000 0 5 3
230 3 p12 74200000 87200000 0 2 3
231 3 p11.1 87900000 91700000 1 6 3
232 3 q11.1 91700000 93200000 1 6 3
233 3 q11.2 93200000 99200000 0 7 3
234 3 q12 99200000 104300000 0 5 3
235 3 q13.1 104300000 112800000 0 2 3
236 3 q13.2 112800000 115000000 0 5 3
237 3 q13.3 115000000 123300000 0 2 3
238 3 q21 123300000 132700000 0 5 3
239 3 q22 132700000 140400000 0 4 3
240 3 q23 140400000 144400000 0 5 3
241 3 q24 144400000 150400000 0 1 3
242 3 q25 150400000 162200000 0 5 3
243 3 q26.1 162200000 169300000 0 1 3
244 3 q26.2 169300000 172800000 0 5 3
245 3 q26.3 172800000 184200000 0 2 3
246 3 q27 184200000 189500000 0 5 3
247 3 q28 189500000 194000000 0 2 3
248 3 q29 194000000 199505740 0 5 3
249 4 p16 0 11000000 0 5 4
250 4 p15.3 11000000 22700000 0 3 4
251 4 p15.2 22700000 27900000 0 5 4
252 4 p15.1 27900000 35600000 0 1 4
253 4 p14 35600000 41100000 0 5 4
254 4 p13 41100000 45800000 0 3 4
255 4 p12 45800000 48900000 0 5 4
256 4 p11 48900000 50900000 1 6 4
257 4 q11 50900000 53200000 1 6 4
258 4 q12 53200000 59700000 0 5 4
259 4 q13 59700000 76600000 0 1 4
260 4 q21 76600000 88400000 0 5 4
261 4 q22 88400000 99200000 0 2 4
262 4 q23 99200000 101400000 0 5 4
263 4 q24 101400000 108000000 0 3 4
264 4 q25 108000000 114400000 0 5 4
265 4 q26 114400000 121100000 0 2 4
266 4 q27 121100000 124300000 0 5 4
267 4 q28 124300000 139800000 0 3 4
268 4 q31.1 139800000 141800000 0 5 4
269 4 q31.2 141800000 152000000 0 4 4
270 4 q31.3 152000000 155900000 0 5 4
271 4 q32 155900000 170500000 0 1 4
272 4 q33 170500000 172300000 0 5 4
273 4 q34 172300000 183600000 0 2 4
274 4 q35 183600000 191411218 0 5 4
275 5 p15.3 0 9900000 0 5 5
276 5 p15.2 9900000 15100000 0 3 5
277 5 p15.1 15100000 18500000 0 5 5
278 5 p14 18500000 29300000 0 1 5
279 5 p13 29300000 42400000 0 5 5
280 5 p12 42400000 45800000 0 3 5
281 5 p11 45800000 47700000 1 6 5
282 5 q11.1 47700000 50500000 1 6 5
283 5 q11.2 50500000 58900000 0 5 5
284 5 q12 58900000 66700000 0 2 5
285 5 q13 66700000 76900000 0 5 5
286 5 q14 76900000 91900000 0 3 5
287 5 q15 91900000 97300000 0 5 5
288 5 q21 97300000 109600000 0 1 5
289 5 q22 109600000 115200000 0 5 5
290 5 q23 115200000 132200000 0 3 5
291 5 q31 132200000 144500000 0 5 5
292 5 q32 144500000 149800000 0 2 5
293 5 q33 149800000 159900000 0 5 5
294 5 q34 159900000 168400000 0 1 5
295 5 q35 168400000 180857866 0 5 5
296 6 p25 0 7000000 0 5 6
297 6 p24 7000000 13500000 0 3 6
298 6 p23 13500000 15300000 0 5 6
299 6 p22 15300000 30000000 0 2 6
300 6 p21.3 30000000 36800000 0 5 6
301 6 p21.2 36800000 40600000 0 4 6
302 6 p21.1 40600000 46300000 0 5 6
303 6 p12 46300000 57500000 0 1 6
304 6 p11.2 57500000 58800000 0 5 6
305 6 p11.1 58800000 60500000 1 6 6
306 6 q11.1 60500000 63400000 1 6 6
307 6 q12 63400000 70000000 0 1 6
308 6 q13 70000000 75900000 0 5 6
309 6 q14 75900000 87500000 0 3 6
310 6 q15 87500000 92100000 0 5 6
311 6 q16 92100000 105100000 0 1 6
312 6 q21 105100000 114500000 0 5 6
313 6 q22 114500000 130400000 0 2 6
314 6 q23 130400000 139100000 0 5 6
315 6 q24 139100000 149100000 0 2 6
316 6 q25 149100000 161000000 0 5 6
317 6 q26 161000000 164500000 0 3 6
318 6 q27 164500000 170975699 0 5 6
319 7 p22 0 7000000 0 5 7
320 7 p21 7000000 20700000 0 1 7
321 7 p15 20700000 30300000 0 5 7
322 7 p14 30300000 43100000 0 2 7
323 7 p13 43100000 47100000 0 5 7
324 7 p12 47100000 53600000 0 2 7
325 7 p11.2 53600000 56900000 0 5 7
326 7 p11.1 56900000 58900000 1 6 7
327 7 q11.1 58900000 61200000 1 6 7
328 7 q11.2 61200000 77200000 0 5 7
329 7 q21 77200000 97600000 0 1 7
330 7 q22 97600000 106900000 0 5 7
331 7 q31 106900000 125900000 0 2 7
332 7 q32 125900000 132000000 0 5 7
333 7 q33 132000000 137100000 0 3 7
334 7 q34 137100000 143000000 0 5 7
335 7 q35 143000000 147300000 0 2 7
336 7 q36 147300000 158628139 0 5 7
337 8 p23 0 12700000 0 5 8
338 8 p22 12700000 19100000 0 1 8
339 8 p21 19100000 28900000 0 5 8
340 8 p12 28900000 38500000 0 2 8
341 8 p11.2 38500000 43200000 0 5 8
342 8 p11.1 43200000 45200000 1 6 8
343 8 q11.1 45200000 48100000 1 6 8
344 8 q11.2 48100000 55700000 0 5 8
345 8 q12 55700000 66100000 0 3 8
346 8 q13 66100000 74200000 0 5 8
347 8 q21.1 74200000 84800000 0 1 8
348 8 q21.2 84800000 87000000 0 5 8
349 8 q21.3 87000000 93400000 0 1 8
350 8 q22 93400000 106200000 0 5 8
351 8 q23 106200000 117700000 0 2 8
352 8 q24.1 117700000 127300000 0 5 8
353 8 q24.2 127300000 140000000 0 3 8
354 8 q24.3 140000000 146274826 0 5 8
355 9 p24 0 9000000 0 5 9
356 9 p23 9000000 14100000 0 2 9
357 9 p22 14100000 19900000 0 5 9
358 9 p21 19900000 33200000 0 1 9
359 9 p13 33200000 41400000 0 5 9
360 9 p12 41400000 44200000 0 3 9
361 9 p11.1 44200000 50600000 1 5 9
362 9 q11.1 50600000 59200000 1 6 9
363 9 q12 59200000 67500000 0 7 9
364 9 q13 67500000 68600000 0 5 9
365 9 q21 68600000 87600000 0 4 9
366 9 q22 87600000 99600000 0 5 9
367 9 q31 99600000 112000000 0 1 9
368 9 q32 112000000 114800000 0 5 9
369 9 q33 114800000 127300000 0 2 9
370 9 q34 127300000 138429268 0 5 9
371 X p22.3 0 9300000 0 5 23
372 X p22.2 9300000 17200000 0 3 23
373 X p22.1 17200000 24700000 0 5 23
374 X p21 24700000 37400000 0 1 23
375 X p11.4 37400000 42100000 0 5 23
376 X p11.3 42100000 47200000 0 2 23
377 X p11.2 47200000 56500000 0 5 23
378 X p11.1 56500000 59400000 1 6 23
379 X q11 59400000 64000000 1 6 23
380 X q12 64000000 67500000 0 5 23
381 X q13 67500000 75800000 0 5 23
382 X q21 75800000 98200000 0 1 23
383 X q22 98200000 108500000 0 5 23
384 X q23 108500000 116300000 0 2 23
385 X q24 116300000 120600000 0 5 23
386 X q25 120600000 129700000 0 1 23
387 X q26 129700000 137700000 0 5 23
388 X q27 137700000 146800000 0 2 23
389 X q28 146800000 154824264 0 5 23
390 Y p11.3 0 3300000 0 5 24
391 Y p11.2 3300000 11200000 0 5 24
392 Y p11.1 11200000 11500000 1 6 24
393 Y q11.1 11500000 12400000 1 6 24
394 Y q11.2 12400000 27100000 0 5 24
395 Y q12 27100000 57701691 0 10 24
>
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> dev.off()
null device
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Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and