OTU count table from 16S sequencing of the throat microbiome samples.

Description

It is part of a microbiome data set for studying the effect of smoking on the upper respiratory tract microbiome. The original data set contains samples from both throat and nose microbiomes, and from both body sides. This data set comes from the throat microbiome of left body side. It contains 60 subjects consisting of 32 nonsmokers and 28 smokers.

Usage

data(throat.otu.tab)

Format

The format is: chr "throat.otu.tab"

Details

The OTU table is produced by the QIIME software. Singleton OTUs have been discarded.

Source

Charlson ES, Chen J, Custers-Allen R, Bittinger K, Li H, et al. (2010) Disordered Microbial Communities in the Upper Respiratory Tract of Cigarette Smokers. PLoS ONE 5(12): e15216.

Examples

data(throat.otu.tab)
## maybe str(throat.otu.tab) ; plot(throat.otu.tab) ...

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(GUniFrac)
Loading required package: vegan
Loading required package: permute
Loading required package: lattice
This is vegan 2.4-0
Loading required package: ape
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/GUniFrac/throat.otu.tab.Rd_%03d_medium.png", width=480, height=480)
> ### Name: throat.otu.tab
> ### Title: OTU count table from 16S sequencing of the throat microbiome
> ###   samples.
> ### Aliases: throat.otu.tab
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(throat.otu.tab)
> ## maybe str(throat.otu.tab) ; plot(throat.otu.tab) ...
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>