Protein coding gene coordinates (GRCh37/hg19)

Description

Protein coding gene coordinates adapted from UCSC Genomes Browser KnownCanonical track.

Usage

data("coords")

Format

A data frame with 18054 observations on the following 4 variables.

chr

a numeric vector

start

a numeric vector

stop

a numeric vector

class

a character vector

Details

These protein coding gene coordinates were adapted from the KnownCanonical track from the UCSC Genome Browser, GRCH37

Source

https://genome.ucsc.edu/cgi-bin/hgTables

References

Rosenbloom, K. R., Armstrong, J., Barber, G. P., Casper, J., Clawson, H., Diekhans, M., Dreszer, T. R., Fujita, P. A., Guruvadoo, L., Haeussler, M., Harte, R. A., Heitner, S., Hickey, G., Hinrichs, A. S., Hubley, R., Karolchik, D., Learned, K., Lee, B. T., Li, C. H., Miga, K.H. , Nguyen, N., Paten, B., Raney, B.J., Smit, A. F., Speir, M. L., Zweig, A. S., Haussler, D., Kuhn, R. M., Kent, W.J. (2015) <DOI:10.1093/nar/gku1177> The UCSC Genome Browser database: 2015 update. Nucleic Acids Res. Jan;43(Database issue):D670-81.

Examples

data("coords")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
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Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(GenCAT)
Loading required package: dplyr

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Loading required package: ggplot2
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/GenCAT/coords.Rd_%03d_medium.png", width=480, height=480)
> ### Name: coords
> ### Title: Protein coding gene coordinates (GRCh37/hg19)
> ### Aliases: coords
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data("coords")
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>