Gene expression data

Description

Normalized gene expression data of 12 patients with colorectal cancer. Samples are taken from inside the tumours. Additionally, from same patients samples are taken from normal tissue, see colon.normal. The expression matrix is only an exemplary subset of 1747 probe sets associated with cell proliferation.

Usage

data(colon.normal)

Format

The format is:
num [1:1747, 1:12] 8.74 10.53 8.48 12.69 8.55 ...
- attr(*, "dimnames")=List of 2
..$ : chr [1:1747] "200808_s_at" "215706_x_at" "217185_s_at" "202136_at" ...
..$ : chr [1:12] "Co10.N.E.84.F.CEL" "Co14.N.E.89.F.CEL" "Co17.N.E.1037.F.CEL" "Co1.N.E.31.F.CEL" ...

References

Groene, J. et al., 2006, Transcriptional census of 36 microdissected colorectal cancers yields a gene signature to distinguish UICC II and III, Int J Cancer 119(8):1829–36.

Examples

data(colon.normal)
#str(colon.normal)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(GlobalAncova)
Loading required package: corpcor
Loading required package: globaltest
Loading required package: survival
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/GlobalAncova/colon.normal.Rd_%03d_medium.png", width=480, height=480)
> ### Name: colon.normal
> ### Title: Gene expression data
> ### Aliases: colon.normal
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(colon.normal)
> #str(colon.normal)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>