Gene expression data

Description

Normalized gene expression data for the van t'Veer example: A subset of 96 samples without BRCA1 or BRCA2 mutations and 1113 genes associated with nine cancer related pathways (see also ?pathways) was chosen.

Usage

data(vantVeer)

Format

The format is:
num [1:1113, 1:96] 0.13 0.936 -0.087 0.118 0.168 -0.081 0.023 -0.086 -0.154 0.025 ...
- attr(*, "dimnames")=List of 2
..$ : chr [1:1113] "AW025529" "NM_001648" "NM_001753" "NM_003298" ...
..$ : chr [1:96] "1" "2" "3" "4" ...

Examples

data(vantVeer)
#str(vantVeer)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(GlobalAncova)
Loading required package: corpcor
Loading required package: globaltest
Loading required package: survival
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/GlobalAncova/vantVeer.Rd_%03d_medium.png", width=480, height=480)
> ### Name: vantVeer
> ### Title: Gene expression data
> ### Aliases: vantVeer
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(vantVeer)
> #str(vantVeer)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>