DRB1 cDNA sequences

Description

DRB1 cDNA sequences, with 0 denote the same as reference (DRB1*0101)

Usage

data(lib.sub)

Format

A data frame with 10 DRB1 alleles (those unique alleles in cases + controls) on the following 92 nucleic acid bases. Column names denote the amino acid position. e.g., X.25.1 means the first nucleic acid base on the -25th amino acid, X9.2 means the second nucleic acid base on the 9th amino acid of DRB1 allele, etc

X.25.1

a factor with levels 0 G

X.24

a factor with levels 0 T

X.17

a factor with levels 0 G

X.16.1

a factor with levels 0 T

X.16.2

a factor with levels 0 T

X.1

a factor with levels 0 T

X4

a factor with levels 0 A

X4.1

a factor with levels 0 A

X8

a factor with levels 0 C

X9

a factor with levels 0 A C G

X9.1

a factor with levels 0 A

X9.2

a factor with levels 0 A

X10.2

a factor with levels 0 C

X11

a factor with levels 0 A G T

X11.1

a factor with levels 0 A C G

X12.2

a factor with levels 0 3 A C

X13

a factor with levels 0 A C G

X13.1

a factor with levels 0 A C G

X13.2

a factor with levels 0 G

X14

a factor with levels 0 A T

X14.2

a factor with levels 0 G

X16

a factor with levels 0 A T

X18.2

a factor with levels 0 T

X19.2

a factor with levels 0 C

X21.2

a factor with levels 0 A C

X23

a factor with levels 0 3 4 A G

X23.2

a factor with levels 0 T

X24.2

a factor with levels 0 A

X26.1

a factor with levels 0 A C G

X26.2

a factor with levels 0 A C T

X28

a factor with levels 0 C

X28.2

a factor with levels 0 C G

X30

a factor with levels 0 C G

X30.1

a factor with levels 0 A C T

X30.2

a factor with levels 0 T

X31

a factor with levels 0 G T

X32

a factor with levels 0 C G

X32.2

a factor with levels 0 C

X33

a factor with levels 0 C

X34.2

a factor with levels 0 G

X35.2

a factor with levels 0 A

X37

a factor with levels 0 A C G

X37.1

a factor with levels 0 2 A T

X37.2

a factor with levels 0 G

X43.2

a factor with levels 0 T

X44.2

a factor with levels 0 A C

X47.1

a factor with levels 0 2 T

X47.2

a factor with levels 0 T

X48.2

a factor with levels 0 A C

X51.2

a factor with levels 0 A C T

X52.2

a factor with levels 0 A

X55.2

a factor with levels 0 C

X57

a factor with levels 0 A

X57.1

a factor with levels 0 C G T

X57.2

a factor with levels 0 A C G

X58.2

a factor with levels 0 G T

X59.2

a factor with levels 0 A C

X60.1

a factor with levels 0 2 C

X67

a factor with levels 0 2 A G T

X67.2

a factor with levels 0 T

X68.2

a factor with levels 0 A

X69.2

a factor with levels 0 A

X70.2

a factor with levels 0 G

X70.3

a factor with levels 0 2 G

X70.4

a factor with levels 0 A C

X71

a factor with levels 0 G T

X71.1

a factor with levels 0 2 A C

X72.2

a factor with levels 0 C T

X73.1

a factor with levels 0 G T

X73.2

a factor with levels 0 A T

X74

a factor with levels 0 A C

X74.1

a factor with levels 0 2 A G T

X75.2

a factor with levels 0 A

X78

a factor with levels 0 C G

X78.1

a factor with levels 0 T

X78.2

a factor with levels 0 A G T

X83.2

a factor with levels 0 T

X86.1

a factor with levels 0 A C T

X86.2

a factor with levels 0 G

X90.2

a factor with levels 0 G

X93

a factor with levels 0 A

X95.2

a factor with levels 0 C

X96

a factor with levels 0 C T

X96.2

a factor with levels 0 A T

X98

a factor with levels 0 G

X120.1

a factor with levels 0 A

X140

a factor with levels 0 A

X179.2

a factor with levels 0 C

X181.2

a factor with levels 0 A

X206.2

a factor with levels 0 T

X217

a factor with levels 0 T

X233.1

a factor with levels 0 G

Examples

data(lib.sub)
## maybe str(lib.sub) ; plot(lib.sub) ...

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'license()' or 'licence()' for distribution details.

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(HAP.ROR)
Loading required package: hash
hash-2.2.6 provided by Decision Patterns

Loading required package: ape

Attaching package: 'HAP.ROR'

The following object is masked from 'package:stats':

    AIC

> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/HAP.ROR/lib.sub.Rd_%03d_medium.png", width=480, height=480)
> ### Name: lib.sub
> ### Title: DRB1 cDNA sequences
> ### Aliases: lib.sub
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(lib.sub)
> ## maybe str(lib.sub) ; plot(lib.sub) ...
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>