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Last data update: 2014.03.03 |
Annotation of all target genes in the screenDescriptionAnnotation of the target genes on one target plate. It includes an ENSEMBL gene identifier, the HUGO name, the position on the plate (well), and the group of the target siRNA (sample or control). Usagedata(TargetAnnotation) FormatA data frame with 345 observations on the following 4 variables.
ReferencesLaufer, Fischer et al., 2013 See Also
Examplesdata(TargetAnnotation, package="HD2013SGI") print(TargetAnnotation$Symbol) Results
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> library(HD2013SGI)
Loading required package: RColorBrewer
Loading required package: gplots
Attaching package: 'gplots'
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Loading required package: geneplotter
Loading required package: Biobase
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match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: lattice
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> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/HD2013SGI/TargetAnnotation.Rd_%03d_medium.png", width=480, height=480)
> ### Name: TargetAnnotation
> ### Title: Annotation of all target genes in the screen
> ### Aliases: TargetAnnotation
> ### Keywords: datasets
>
> ### ** Examples
>
> data(TargetAnnotation, package="HD2013SGI")
> print(TargetAnnotation$Symbol)
[1] "TDRD6" "PRDM11" "KDM1B" "INTS12" "ARID3C" "JMJD4"
[7] "SHPRH" "PHF23" "TDRD5" "BRD9" "RCOR2" "JMJD5"
[13] "SETD8" "ATF7IP2" "MECOM" "SETD6" "TP53" "JHDM1D"
[19] "TCF20" "TDRD3" "PHF1" "SETD3" "CHEK1" "SP100"
[25] "TDRKH" "SMARCA1" "SRCAP" "SMARCA2" "CBX3" "HLTF"
[31] "TDRD7" "SMARCA4" "MYST2" "SMARCB1" "PSIP1" "SMARCC1"
[37] "RCOR1" "SMARCC2" "CBX5" "SMARCD2" "BRD4" "SMARCD3"
[43] "BAZ2A" "SMARCE1" "BAZ1A" "neg" "ING2" "INO80B"
[49] "JARID2" "KDM2B" "KDM6A" "ZGPAT" "ARID4A" "SUV420H2"
[55] "KDM5A" "CHD6" "PRDM2" "PHF5A" "KDM5B" "TSPYL5"
[61] "ZMYND11" "MUM1" "KDM5C" "PYGO2" "KDM5D" "PRMT10"
[67] "ARID5A" "PRDM6" "COPB2" "SUV39H1" "MYST4" "TADA2A"
[73] "SIN3B" "TP53BP1" "SP140" "WHSC1" "KDM1A" "BRPF1"
[79] "PHF15" "MYST3" "CHD5" "BRD3" "SND1" "MLLT10"
[85] "ATAD2" "MLL2" "SETD2" "DPF3" "BRPF3" "AKAP1"
[91] "BRD1" "neg" "PRDM4" "MBD6" "DMTF1" "INO80C"
[97] "ASH2L" "MUM1L1" "MTF2" "PHF13" "SMYD5" "ZCWPW2"
[103] "KDM6B" "MIER3" "ARID4B" "PWWP2B" "KDM3B" "ARID2"
[109] "PYGO1" "BRWD3" "DNAJC2" "INO80E" "PHF12" "JMJD8"
[115] "PLK1" "CHAF1B" "GMEB2" "RUVBL1" "BAZ2B" "ARID1A"
[121] "SIN3A" "MTA1" "CXXC1" "HDAC3" "HDAC7" "KAT2B"
[127] "SMARCAL1" "SMARCA5" "TRIM33" "MTA2" "ATAD2B" "MBD4"
[133] "PRMT7" "MBD2" "ING3" "HAT1" "PHF21A" "neg"
[139] "PRDM12" "TAF3" "PRDM16" "SP140L" "KDM3A" "SETMAR"
[145] "PHF20L1" "SNAPC4" "PRDM15" "neg" "ARID5B" "neg"
[151] "TSPYL2" "neg" "ING5" "neg" "DNAJC1" "neg"
[157] "ING4" "neg" "PHF20" "neg" "UBC" "TRIM24"
[163] "RSF1" "PRDM1" "ACTL6B" "ACTL6A" "MBD3" "RERE"
[169] "PHF11" "CHD1" "PHF7" "CHD2" "WHSC1L1" "CHD3"
[175] "STK31" "CHD4" "TRERF1" "DNMT1" "BDP1" "TRDMT1"
[181] "HDAC8" "DNMT3A" "ASH1L" "neg" "SMYD2" "TAF1"
[187] "JMJD1C" "TRRAP" "SMYD4" "TAF1L" "UHRF2" "ZMYND8"
[193] "SMYD1" "NAP1L1" "HDGF" "NAP1L4" "RBBP4" "NAP1L5"
[199] "RBBP7" "DPF2" "SET" "BRD2" "PHF2" "TERF1"
[205] "SMARCD1" "TERF2" "CHEK1" "CDC5L" "SMARCAD1" "CREBBP"
[211] "PRDM10" "ARID3A" "CHD7" "EZH1" "PRMT6" "EZH2"
[217] "PBRM1" "BPTF" "RCOR3" "EP300" "PHF10" "KAT2A"
[223] "CBX8" "MSH6" "MLL3" "SP110" "ARID1B" "ITIH4"
[229] "NSD1" "neg" "CBX4" "PRMT5" "TSPYL1" "PRMT3"
[235] "KDM4A" "EHMT2" "CHAF1A" "ARID3B" "KDM4C" "MORF4L1"
[241] "PHF8" "MSL3" "DIDO1" "CBX1" "KDM2A" "CARM1"
[247] "KDM4B" "GMEB1" "SETD1B" "SMNDC1" "TSPYL4" "DEAF1"
[253] "COPB2" "PRMT1" "ACTR6" "HDAC1" "CHD8" "HDAC2"
[259] "MIER1" "MBD1" "FBXO11" "MECP2" "CHD9" "MGMT"
[265] "PHF6" "MLL" "DOT1L" "MLLT6" "SUV39H2" "NCOR1"
[271] "EHMT1" "NCOR2" "SETD7" "CDYL" "SETDB2" "neg"
[277] "CBX6" "DPF1" "PHF3" "BAZ1B" "CBX7" "DNMT3B"
[283] "CECR2" "PRMT2" "SUV420H1" "PHF14" "HP1BP3" "TXNDC9"
[289] "BRD7" "ING1" "MIER2" "PRDM5" "INO80D" "UHRF1"
[295] "BRWD1" "SMYD3" "MPHOSPH8" "TCF19" "PLK1" "HDAC5"
[301] "GLYR1" "HDAC6" "ACTR5" "HDAC9" "HDAC10" "SETD1A"
[307] "HDGFRP2" "MLL4" "PHF17" "HDAC4" "CBX2" "PHF16"
[313] "MYST1" "SETDB1" "MYSM1" "TRIM28" "PWWP2A" "RUVBL2"
[319] "TADA2B" "BRD8" "ACTR8" "neg" "KDM4D" "KAT5"
[325] "PHIP" "JMJD6" "WDR11" "PHF19" "SETD5" "INO80"
[331] "ATF7IP" "DMAP1" "ZCWPW1" "EP400" "MBD5" "HDAC11"
[337] "C14orf106" "KTI12" "ALG13" "FBXO10" "MLL5" "SETD4"
[343] "PHRF1" "PRDM8" "UBC"
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