Original phenotypic measurements in screen order

Description

Original phenotypic features in screen order. Anno contains the annotation for each experiment including the plate name, row, col, and field. data is a data.frame with a column for each phenotypic feature and rows as much as there are experiments in the screen.

Usage

data(featuresPerWell)

Format

The format is: List of 2 $ Anno:'data.frame': 231840 obs. of 4 variables: ..$ plate: chr [1:231840] "001CIQ01IRI" "001CIQ01IRI" "001CIQ01IRI" "001CIQ01IRI" ... ..$ row : chr [1:231840] "B" "B" "B" "B" ... ..$ col : chr [1:231840] "1" "1" "1" "1" ... ..$ field: chr [1:231840] "1" "2" "3" "4" ... $ data: num [1:231840, 1:353] 2780 3120 2242 2603 2170 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : NULL .. ..$ : chr [1:353] "count" "nuc.0.m.cx" "nuc.0.m.cy" "nuc.0.m.majoraxis" ...

References

Laufer, Fischer et al., 2013

See Also

HD2013SGI

Examples

data(featuresPerWell, package="HD2013SGI")
plot(log2(featuresPerWell$data[,1]),pch=".")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(HD2013SGI)
Loading required package: RColorBrewer
Loading required package: gplots

Attaching package: 'gplots'

The following object is masked from 'package:stats':

    lowess

Loading required package: geneplotter
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: lattice
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: stats4
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Attaching package: 'S4Vectors'

The following object is masked from 'package:gplots':

    space

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: XML
Loading required package: splots
Loading required package: limma

Attaching package: 'limma'

The following object is masked from 'package:geneplotter':

    plotMA

The following object is masked from 'package:BiocGenerics':

    plotMA

Loading required package: vcd
Loading required package: grid

Attaching package: 'vcd'

The following object is masked from 'package:IRanges':

    tile

Loading required package: LSD
Loading required package: EBImage

Attaching package: 'EBImage'

The following object is masked from 'package:vcd':

    tile

The following objects are masked from 'package:IRanges':

    resize, tile

The following object is masked from 'package:Biobase':

    channel

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/HD2013SGI/featuresPerWell.Rd_%03d_medium.png", width=480, height=480)
> ### Name: featuresPerWell
> ### Title: Original phenotypic measurements in screen order
> ### Aliases: featuresPerWell
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(featuresPerWell, package="HD2013SGI")
> plot(log2(featuresPerWell$data[,1]),pch=".")
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>