IN-HOUSE NUCLEIC ACID AMPLIFICATION TESTS (INH) FOR TB PLEURITIS

Description

This dataset gives the observed cross-tabulation of the test under evaluation (nucleic acid amplification test) and the reference test. In studies 1 and 2, the reference test was a culture test, in studies 3 and 4 it was a composite reference test of culture and clinical data (including signs, symptoms and clinical response to empiric TB therapy) and in studies 5 to 11 it was a composite reference test of culture and biopsy.

Usage

data(In.house)

Format

A matrix with 11 observations on the following 4 variables.

++

Observed individuals who tested positive on both tests

+-

Observed individuals who tested positive on the test under evaluation and negative on the reference test

-+

Observed individuals who tested negative on the test under evaluation and positive on the reference test

---

Observed individuals who tested negative on both tests

References

Pai, M. et al. (2004) Nucleic acid amplification in the diagnosis of tuberculous pleuritis: a systematic review and meta-analysis. BMC Infect Dis 2004, 4:6.

Examples

data(In.house)
In.house

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(HSROC)
Loading required package: lattice
Loading required package: coda
Loading required package: MASS
Loading required package: MCMCpack
##
## Markov Chain Monte Carlo Package (MCMCpack)
## Copyright (C) 2003-2016 Andrew D. Martin, Kevin M. Quinn, and Jong Hee Park
##
## Support provided by the U.S. National Science Foundation
## (Grants SES-0350646 and SES-0350613)
##
##
## Hierarchical Summary Receiver Operating Characteristic package (HSROC)
## Copyright (C) 2010-2016 Ian Schiller and Nandini Dendukuri 
##
## Development of HSROC package was supported by grants from the 
## Canadian Institutes of Health Research (MOP #89857) 
## and the Fonds de la Recherche en Sant<U+00E9> Qu<U+00E9>bec. 
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/HSROC/In.house.Rd_%03d_medium.png", width=480, height=480)
> ### Name: In.house
> ### Title: IN-HOUSE NUCLEIC ACID AMPLIFICATION TESTS (INH) FOR TB PLEURITIS
> ### Aliases: In.house
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(In.house)
> In.house
   ++ +- -+ --
1  11  1 14 75
2   1  1  3 25
3   8  0  1 16
4  16  6  0 43
5  16  0  1 56
6   9  0  6 10
7  13  0  4 25
8  17  2  4 84
9   7  0  3 13
10 14  1 19 97
11 31  7 11 63
> 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>