CEU genotype data

Description

CEU genotype data including 78 individuals

Usage

data("samplesnp")

Format

A data frame with 11 SNPs on the 78 individuals

Value

A data frame with 11 SNPs on the 78 individuals

Source

The data has 1000 genomes Phages 1 dataset and was imputed by GEUVADIS (Genetic European Variation in Health and Disease, A European Medical Sequencing Consortium) RNA sequencing project for 1000 Genomes samples (http://www.geuvadis.org/web/geuvadis/RNAseq-project).

References

Tuuli Lappalainen, et al. (2013). Transcriptome and genome sequencing uncovers functional variation in humans. Nature 501, 506-511.

Examples

data(samplesnp)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(IVAS)
Loading required package: GenomicFeatures
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

No methods found in "BiocGenerics" for requests: unlist
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/IVAS/samplesnp.Rd_%03d_medium.png", width=480, height=480)
> ### Name: samplesnp
> ### Title: CEU genotype data
> ### Aliases: samplesnp
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(samplesnp)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>