Data for example 3.

Description

Simulated data spanning all autosomes and X,Y chromosomes of the human genome (build hg18). Values consist of a single dataseries of random uniform distribution between -1 and + 1. The chromosomes are tiled in 1Mb bins and coordinates are one-based.

Usage

data(binned_fullGenome)

Source

Simulated data, generated by Shraddha Pai

Examples

data(binned_fullGenome)
head(binned_fullGenome)
seqlevels(binned_fullGenome)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(IdeoViz)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Loading required package: RColorBrewer
Loading required package: rtracklayer
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/IdeoViz/binned_fullGenome.Rd_%03d_medium.png", width=480, height=480)
> ### Name: binned_fullGenome
> ### Title: Data for example 3.
> ### Aliases: binned_fullGenome
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(binned_fullGenome)
> head(binned_fullGenome)
GRanges object with 6 ranges and 1 metadata column:
      seqnames             ranges strand |              value
         <Rle>          <IRanges>  <Rle> |          <numeric>
  [1]     chr1 [      1,  500000]      * |  0.764650561381131
  [2]     chr1 [ 500001, 1000000]      * | -0.816059981938452
  [3]     chr1 [1000001, 1500000]      * |  -0.54663537396118
  [4]     chr1 [1500001, 2000000]      * |  -0.57633910747245
  [5]     chr1 [2000001, 2500000]      * | -0.162541799712926
  [6]     chr1 [2500001, 3000000]      * | -0.572965846396983
  -------
  seqinfo: 24 sequences from an unspecified genome; no seqlengths
> seqlevels(binned_fullGenome)
 [1] "chr1"  "chr10" "chr11" "chr12" "chr13" "chr14" "chr15" "chr16" "chr17"
[10] "chr18" "chr19" "chr2"  "chr20" "chr21" "chr22" "chr3"  "chr4"  "chr5" 
[19] "chr6"  "chr7"  "chr8"  "chr9"  "chrX"  "chrY" 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>