Data for vignette example 1.

Description

A simulated dataseries spanning chr1,chrX,chrY of the human genome (build hg18). Values consist of five series constructed to show mostly random behaviour with the exception of elevated signal in a few regions. The chromosomes are tiled in 1Mb bins and coordinates are one-based.

Usage

data(binned_multiSeries)

Source

Simulated data, generated by Shraddha Pai

Examples

data(binned_multiSeries)
head(binned_multiSeries)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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Platform: x86_64-pc-linux-gnu (64-bit)

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> library(IdeoViz)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Loading required package: RColorBrewer
Loading required package: rtracklayer
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/IdeoViz/binned_multiSeries.Rd_%03d_medium.png", width=480, height=480)
> ### Name: binned_multiSeries
> ### Title: Data for vignette example 1.
> ### Aliases: binned_multiSeries
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(binned_multiSeries)
> head(binned_multiSeries)
GRanges object with 6 ranges and 5 metadata columns:
      seqnames             ranges strand |              group1           group2
         <Rle>          <IRanges>  <Rle> |           <numeric>        <numeric>
  [1]     chr1 [      1, 1000000]      * |    1.16083268301047  1.2396606248844
  [2]     chr1 [1000001, 2000000]      * |   0.787136053312323 2.33758019036697
  [3]     chr1 [2000001, 3000000]      * |   0.674748552642199 1.62803097047586
  [4]     chr1 [3000001, 4000000]      * |    1.45466374366359 1.80170049069915
  [5]     chr1 [4000001, 5000000]      * | -0.0277634402929356 2.02068996130268
  [6]     chr1 [5000001, 6000000]      * |   0.775254975625319 1.91747836112765
                group3           group4           group5
             <numeric>        <numeric>        <numeric>
  [1] 3.24756953238648 3.86377077160749 5.58411933463825
  [2]  2.8530211843901 4.45654013689332 4.79343681760785
  [3] 2.70567993919131 3.62793709856649 4.78429176108353
  [4] 3.41284960457975 3.49821116525133 5.17623234796423
  [5] 3.43598286061673 4.38873660666656 4.86745117896633
  [6] 3.26100276895158 4.57827181980266 4.54942008857105
  -------
  seqinfo: 3 sequences from an unspecified genome; no seqlengths
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>