An annotation data object that maps Gene Ontology (GO) identifiers to Enzyme Commission numbers

Description

KEGGGO2ENZYMEID maps GO identifiers to Enzyme Commission numbers

Details

This is an R object containing key and value pairs. Keys are GO identifiers and values are Enzyme Commission numbers. Values are vectors of length 1. GO identifiers can not be mapped to any Enzyme Commission number are assigned NAs.

Mappings are based on data provided by: Gene Ontology External Link http://www.geneontology.org/external2go With a date stamp from the source of: 2015-Sepec2go27

References

ftp://ftp.genome.ad.jp/pub/kegg/pathways

See Also

• AnnotationDb-class for use of the select() interface.

Examples

## select() interface:
## Objects in this package can be accessed using the select() interface
## from the AnnotationDbi package. See ?select for details.

## Bimap interface:
xx <- as.list(KEGGGO2ENZYMEID)
if(length(xx) > 0){
    # Get the value of the first key
    xx[[1]]
    # Get values for a few keys
    if(length(xx) >= 3){
    	xx[1:3]
    }
}

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(KEGG.db)
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums


KEGG.db contains mappings based on older data because the original
  resource was removed from the the public domain before the most
  recent update was produced. This package should now be considered
  deprecated and future versions of Bioconductor may not have it
  available.  Users who want more current data are encouraged to look
  at the KEGGREST or reactome.db packages

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/KEGG.db/KEGGGO2ENZYMEID.Rd_%03d_medium.png", width=480, height=480)
> ### Name: KEGGGO2ENZYMEID
> ### Title: An annotation data object that maps Gene Ontology (GO)
> ###   identifiers to Enzyme Commission numbers
> ### Aliases: KEGGGO2ENZYMEID
> ### Keywords: datasets
> 
> ### ** Examples
> 
> ## select() interface:
> ## Objects in this package can be accessed using the select() interface
> ## from the AnnotationDbi package. See ?select for details.
> 
> ## Bimap interface:
> xx <- as.list(KEGGGO2ENZYMEID)
> if(length(xx) > 0){
+     # Get the value of the first key
+     xx[[1]]
+     # Get values for a few keys
+     if(length(xx) >= 3){
+     	xx[1:3]
+     }
+ }
$`GO:0016491`
[1] "EC:1"

$`GO:0008748`
[1] "EC:1.-.-.-"

$`GO:0043738`
[1] "EC:1.-.-.-"

> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>