Linear inverse model specification for the Gulf of Riga *autumn* planktonic food web

Description

Linear inverse model specification for the Gulf of Riga planktonic food web in *autumn* as in Donali et al. (1999).

The Gulf of Riga is a highly eutrophic system in the Baltic Sea.

The foodweb comprises 7 functional compartments and two external compartments, connected with 26 flows. Units of the flows are mg C/m3/day

The linear inverse model LIMRigaAutumn is generated from the file RigaAutumn.input which can be found in subdirectory /examples/FoodWeb of the package directory

In this subdirectory you will find many foodweb example input files

These files can be read using Read and their output processed by Setup which will produce a linear inverse problem specification similar to LIMRigaAutumn

Usage

data(LIMRigaAutumn)

Format

a list of matrices, vectors, names and values that specify the linear inverse model problem.

see the return value of Setup for more information about this list

A more complete description of this structures is in vignette("LIM")

Author(s)

Karline Soetaert <karline.soetaert@nioz.nl>

Dick van Oevelen<dick.vanoevelen@nioz.nl>

References

Donali, E., Olli, K., Heiskanen, A.S., Andersen, T., 1999. Carbon flow patterns in the planktonic food web of the Gulf of Riga, the Baltic Sea: a reconstruction by the inverse method. Journal of Marine Systems 23, 251..268.

See Also

browseURL(paste(system.file(package="LIM"), "/doc/examples/Foodweb/", sep=""))

contains "RigaAutumn.input", the input file; read this with Setup

LIMTakapoto, LIMRigaSummer, LIMRigaSpring and many others

Examples

rigaAutumn <- Flowmatrix(LIMRigaAutumn)
plotweb(rigaAutumn, main = "Gulf of Riga planktonic food web, autumn",
        sub = "mgC/m3/day")
# ranges of flows
Plotranges(LIMRigaAutumn, lab.cex = 0.7, xlab = "mgC/m3/d",
        main = "Gulf of Riga planktonic food web, autumn, Flowranges")
# ranges of variables
Plotranges(LIMRigaAutumn, type="V", lab.cex = 0.7, xlab = "mgC/m3/d",
        main = "Gulf of Riga planktonic food web, autumn, variables")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(LIM)
Loading required package: limSolve
Loading required package: diagram
Loading required package: shape
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/LIM/LIMRigaAutumn.Rd_%03d_medium.png", width=480, height=480)
> ### Name: LIMRigaAutumn
> ### Title: Linear inverse model specification for the Gulf of Riga *autumn*
> ###   planktonic food web
> ### Aliases: LIMRigaAutumn
> ### Keywords: datasets
> 
> ### ** Examples
> 
> rigaAutumn <- Flowmatrix(LIMRigaAutumn)
> plotweb(rigaAutumn, main = "Gulf of Riga planktonic food web, autumn",
+         sub = "mgC/m3/day")
> # ranges of flows
> Plotranges(LIMRigaAutumn, lab.cex = 0.7, xlab = "mgC/m3/d",
+         main = "Gulf of Riga planktonic food web, autumn, Flowranges")
> # ranges of variables
> Plotranges(LIMRigaAutumn, type="V", lab.cex = 0.7, xlab = "mgC/m3/d",
+         main = "Gulf of Riga planktonic food web, autumn, variables")
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>