Raw NCI networks from reactome as graphNEL objects

Description

A list of graphNEL objects read from Cytoscape using the CytoscapeRPC Cytoscape plugin in combination with the RCytoscape bioconductor package. This list contains 487 of the Reactome pathways of the NCI PID.

Usage

reactome.cyList

Format

A list of 460 graphNEL objects.

Author(s)

Laurent Jacob

Examples

data("reactome-cyList")
length(reactome.cyList)

library(Rgraphviz)
plot(reactome.cyList[[1]])

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(NCIgraphData)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/NCIgraphData/reactome.cyList.Rd_%03d_medium.png", width=480, height=480)
> ### Name: reactome.cyList
> ### Title: Raw NCI networks from reactome as graphNEL objects
> ### Aliases: reactome.cyList
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data("reactome-cyList")
> length(reactome.cyList)
[1] 487
> 
> library(Rgraphviz)
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: grid
> plot(reactome.cyList[[1]])
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>