Result of the feature selection function

Description

This file contains the result of the feature selection function for 40 itterations.

Usage

data(selected)

Format

List of 4
 $ selected      : chr [1:40] 
 $ correlation   : num [1:40] 
 $ ratioPositive : num [1:40] 
 $ correlationAll:List of 40 Named num vectors

Value

A list containing the vector selected of selected features, the vector correlation of their correlations at the time they were selected, the vector ratioPositive with the fraction of positive correlations for each iteration and a list correlationAll which contains the correlations of all features at each iteration step.

Examples

data(selected)
str(selected)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(PGPC)
Loading required package: EBImage
Loading required package: imageHTS
Loading required package: cellHTS2
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: 'Biobase'

The following object is masked from 'package:EBImage':

    channel

Loading required package: genefilter
Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
locfit 1.5-9.1 	 2013-03-22
Loading required package: grid
Loading required package: SearchTrees
Loading required package: limma

Attaching package: 'limma'

The following object is masked from 'package:BiocGenerics':

    plotMA

Loading required package: gplots

Attaching package: 'gplots'

The following object is masked from 'package:stats':

    lowess

Loading required package: ggplot2

Attaching package: 'ggplot2'

The following object is masked from 'package:cellHTS2':

    annotate

Loading required package: geneplotter
Loading required package: lattice
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:gplots':

    space

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums


Attaching package: 'IRanges'

The following objects are masked from 'package:EBImage':

    resize, tile

Loading required package: XML
Loading required package: ChemmineR

Attaching package: 'ChemmineR'

The following object is masked from 'package:S4Vectors':

    fold

The following object is masked from 'package:limma':

    makeUnique

Loading required package: reshape2
Loading required package: plyr

Attaching package: 'plyr'

The following object is masked from 'package:IRanges':

    desc

The following object is masked from 'package:S4Vectors':

    rename

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/PGPC/selected.Rd_%03d_medium.png", width=480, height=480)
> ### Name: selected
> ### Title: Result of the feature selection function
> ### Aliases: selected
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(selected)
> str(selected)
List of 4
 $ selected      : chr [1:40] "n" "cseg.act.m.majoraxis.mean" "cseg.act.h.cor.s1.mean" "nseg.0.m.majoraxis.mean" ...
 $ correlation   : num [1:40] 0.904 0.912 0.88 0.857 0.825 ...
 $ ratioPositive : num [1:40] 1 0.984 0.964 0.958 0.948 ...
 $ correlationAll:List of 40
  ..$ : Named num [1:310] 0.904 0.857 0.798 0.856 0.864 ...
  .. ..- attr(*, "names")= chr [1:310] "n" "nseg.0.m.majoraxis.mean" "nseg.0.m.eccentricity.mean" "nseg.0.s.area.mean" ...
  ..$ : Named num [1:309] 0.857 0.788 0.854 0.852 0.854 ...
  .. ..- attr(*, "names")= chr [1:309] "nseg.0.m.majoraxis.mean" "nseg.0.m.eccentricity.mean" "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" ...
  ..$ : Named num [1:308] 0.857 0.781 0.701 0.719 0.702 ...
  .. ..- attr(*, "names")= chr [1:308] "nseg.0.m.majoraxis.mean" "nseg.0.m.eccentricity.mean" "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" ...
  ..$ : Named num [1:307] 0.857 0.78 0.697 0.713 0.698 ...
  .. ..- attr(*, "names")= chr [1:307] "nseg.0.m.majoraxis.mean" "nseg.0.m.eccentricity.mean" "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" ...
  ..$ : Named num [1:306] 0.78 0.333 -0.344 0.33 0.75 ...
  .. ..- attr(*, "names")= chr [1:306] "nseg.0.m.eccentricity.mean" "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" ...
  ..$ : Named num [1:305] 0.78 0.304 -0.364 0.302 0.742 ...
  .. ..- attr(*, "names")= chr [1:305] "nseg.0.m.eccentricity.mean" "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" ...
  ..$ : Named num [1:304] 0.78 0.3 -0.367 0.297 0.733 ...
  .. ..- attr(*, "names")= chr [1:304] "nseg.0.m.eccentricity.mean" "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" ...
  ..$ : Named num [1:303] 0.78 0.297 -0.371 0.296 0.733 ...
  .. ..- attr(*, "names")= chr [1:303] "nseg.0.m.eccentricity.mean" "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" ...
  ..$ : Named num [1:302] 0.297 -0.712 -0.296 0.174 -0.725 ...
  .. ..- attr(*, "names")= chr [1:302] "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" ...
  ..$ : Named num [1:301] 0.297 -0.726 -0.296 0.175 -0.756 ...
  .. ..- attr(*, "names")= chr [1:301] "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" ...
  ..$ : Named num [1:300] 0.297 -0.725 -0.297 0.176 -0.759 ...
  .. ..- attr(*, "names")= chr [1:300] "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" ...
  ..$ : Named num [1:299] 0.297 -0.73 -0.308 0.175 -0.768 ...
  .. ..- attr(*, "names")= chr [1:299] "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" ...
  ..$ : Named num [1:298] 0.2969 -0.7366 -0.3483 0.0506 -0.7945 ...
  .. ..- attr(*, "names")= chr [1:298] "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" ...
  ..$ : Named num [1:297] 0.2969 -0.7368 -0.3503 0.0495 -0.7957 ...
  .. ..- attr(*, "names")= chr [1:297] "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" ...
  ..$ : Named num [1:296] 0.2969 -0.7359 -0.3483 0.0486 -0.7947 ...
  .. ..- attr(*, "names")= chr [1:296] "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" ...
  ..$ : Named num [1:295] 0.2969 -0.7519 -0.3502 0.0494 -0.8023 ...
  .. ..- attr(*, "names")= chr [1:295] "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" ...
  ..$ : Named num [1:294] 0.2969 -0.7584 -0.3538 0.0272 -0.8103 ...
  .. ..- attr(*, "names")= chr [1:294] "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" ...
  ..$ : Named num [1:293] 0.2969 -0.7707 -0.3546 -0.0106 -0.8155 ...
  .. ..- attr(*, "names")= chr [1:293] "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" ...
  ..$ : Named num [1:292] 0.2969 -0.7805 -0.3764 -0.0106 -0.8182 ...
  .. ..- attr(*, "names")= chr [1:292] "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" ...
  ..$ : Named num [1:291] 0.2969 -0.781 -0.3763 -0.0118 -0.8182 ...
  .. ..- attr(*, "names")= chr [1:291] "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" ...
  ..$ : Named num [1:290] 0.297 -0.793 -0.544 -0.172 -0.824 ...
  .. ..- attr(*, "names")= chr [1:290] "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" ...
  ..$ : Named num [1:289] 0.297 -0.797 -0.541 -0.174 -0.838 ...
  .. ..- attr(*, "names")= chr [1:289] "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" ...
  ..$ : Named num [1:288] 0.297 -0.797 -0.546 -0.187 -0.839 ...
  .. ..- attr(*, "names")= chr [1:288] "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" ...
  ..$ : Named num [1:287] 0.297 -0.8 -0.563 -0.19 -0.839 ...
  .. ..- attr(*, "names")= chr [1:287] "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" ...
  ..$ : Named num [1:286] 0.297 -0.801 -0.572 -0.191 -0.839 ...
  .. ..- attr(*, "names")= chr [1:286] "nseg.0.s.area.mean" "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" ...
  ..$ : Named num [1:285] -0.801 -0.973 -0.235 -0.844 -0.112 ...
  .. ..- attr(*, "names")= chr [1:285] "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" "nseg.0.s.radius.max.mean" ...
  ..$ : Named num [1:284] -0.801 -0.973 -0.266 -0.844 -0.114 ...
  .. ..- attr(*, "names")= chr [1:284] "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" "nseg.0.s.radius.max.mean" ...
  ..$ : Named num [1:283] -0.801 -0.973 -0.268 -0.846 -0.127 ...
  .. ..- attr(*, "names")= chr [1:283] "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" "nseg.0.s.radius.max.mean" ...
  ..$ : Named num [1:282] -0.801 -0.974 -0.267 -0.847 -0.132 ...
  .. ..- attr(*, "names")= chr [1:282] "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" "nseg.0.s.radius.max.mean" ...
  ..$ : Named num [1:281] -0.801 -0.974 -0.269 -0.849 -0.132 ...
  .. ..- attr(*, "names")= chr [1:281] "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" "nseg.0.s.radius.max.mean" ...
  ..$ : Named num [1:280] -0.801 -0.974 -0.271 -0.85 -0.135 ...
  .. ..- attr(*, "names")= chr [1:280] "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" "nseg.0.s.radius.max.mean" ...
  ..$ : Named num [1:279] -0.801 -0.976 -0.271 -0.85 -0.146 ...
  .. ..- attr(*, "names")= chr [1:279] "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" "nseg.0.s.radius.max.mean" ...
  ..$ : Named num [1:278] -0.801 -0.976 -0.28 -0.85 -0.152 ...
  .. ..- attr(*, "names")= chr [1:278] "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" "nseg.0.s.radius.max.mean" ...
  ..$ : Named num [1:277] -0.801 -0.977 -0.287 -0.851 -0.152 ...
  .. ..- attr(*, "names")= chr [1:277] "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" "nseg.0.s.radius.max.mean" ...
  ..$ : Named num [1:276] -0.801 -0.977 -0.291 -0.851 -0.153 ...
  .. ..- attr(*, "names")= chr [1:276] "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" "nseg.0.s.radius.max.mean" ...
  ..$ : Named num [1:275] -0.801 -0.978 -0.293 -0.852 -0.154 ...
  .. ..- attr(*, "names")= chr [1:275] "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" "nseg.0.s.radius.max.mean" ...
  ..$ : Named num [1:274] -0.801 -0.978 -0.297 -0.858 -0.155 ...
  .. ..- attr(*, "names")= chr [1:274] "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" "nseg.0.s.radius.max.mean" ...
  ..$ : Named num [1:273] -0.801 -0.978 -0.298 -0.859 -0.226 ...
  .. ..- attr(*, "names")= chr [1:273] "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" "nseg.0.s.radius.max.mean" ...
  ..$ : Named num [1:272] -0.801 -0.978 -0.304 -0.859 -0.238 ...
  .. ..- attr(*, "names")= chr [1:272] "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" "nseg.0.s.radius.max.mean" ...
  ..$ : Named num [1:271] -0.801 -0.978 -0.304 -0.86 -0.245 ...
  .. ..- attr(*, "names")= chr [1:271] "nseg.0.s.perimeter.mean" "nseg.0.s.radius.mean.mean" "nseg.0.s.radius.min.mean" "nseg.0.s.radius.max.mean" ...
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>