Last data update: 2014.03.03

 R: Molecular Concepts prepared at VAI
VAImcsR Documentation

Molecular Concepts prepared at VAI

Description

A few gene sets compiled at VAI. We have found useful in our analysis.

Usage

data(VAImcs)

Format

a list of "smc" objects

Source

See individual concepts for PMID or other source information.

Examples

data(VAImcs)
str(VAImcs)

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(PGSEA)
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums


Loading required package: KEGG.db

KEGG.db contains mappings based on older data because the original
  resource was removed from the the public domain before the most
  recent update was produced. This package should now be considered
  deprecated and future versions of Bioconductor may not have it
  available.  Users who want more current data are encouraged to look
  at the KEGGREST or reactome.db packages

Loading required package: annaffy
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/PGSEA/VAImcs.Rd_%03d_medium.png", width=480, height=480)
> ### Name: VAImcs
> ### Title: Molecular Concepts prepared at VAI
> ### Aliases: VAImcs
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(VAImcs)
> str(VAImcs)
List of 39
 $ CMYC.1                 :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "CMYC.1  "
  .. ..@ desc      : chr "down  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "16273092"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "processed"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:89] "27" "101" "406" "493" ...
 $ CMYC.1                 :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "CMYC.1  "
  .. ..@ desc      : chr "up  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "16273092"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "processed"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:106] "219" "471" "617" "1019" ...
 $ E2F3.1                 :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "E2F3.1  "
  .. ..@ desc      : chr "down  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "16273092"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "processed"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:31] "1969" "1973" "3371" "3553" ...
 $ E2F3.1                 :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "E2F3.1  "
  .. ..@ desc      : chr "up  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "16273092"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "processed"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:206] "109" "205" "207" "231" ...
 $ HRAS.1                 :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "HRAS.1  "
  .. ..@ desc      : chr "down  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "16273092"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "processed"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:69] "19" "604" "834" "835" ...
 $ HRAS.1                 :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "HRAS.1  "
  .. ..@ desc      : chr "up  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "16273092"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "processed"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:181] "101" "154" "384" "490" ...
 $ SRC.1                  :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "SRC.1  "
  .. ..@ desc      : chr "down  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "16273092"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "processed"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:47] "47" "164" "834" "1296" ...
 $ SRC.1                  :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "SRC.1  "
  .. ..@ desc      : chr "up  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "16273092"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "processed"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:10] "5896" "6157" "6181" "6205" ...
 $ BRAF.1                 :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "BRAF.1  "
  .. ..@ desc      : chr "up  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr(0) 
  .. ..@ identifier: chr "15048078"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "list"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:37] "55845" "2521" "79882" "9563" ...
 $ BRAF.1                 :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "BRAF.1  "
  .. ..@ desc      : chr "down  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr(0) 
  .. ..@ identifier: chr "15048078"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "list"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:45] "3257" "4628" "23759" "10162" ...
 $ ES.M.1                 :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "ES.M.1  "
  .. ..@ desc      : chr "UP  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr "DELTA"
  .. ..@ identifier: chr "15971941"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "list"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:137] "1001" "10157" "10637" "10653" ...
 $ ES.M.1                 :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "ES.M.1  "
  .. ..@ desc      : chr "DOWN  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr "DELTA"
  .. ..@ identifier: chr "15971941"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "list"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:126] "10312" "10413" "10484" "1052" ...
 $ ES.NMH.1               :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "ES.NMH.1  "
  .. ..@ desc      : chr "BIG  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr(0) 
  .. ..@ identifier: chr "12228720"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "list"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:230] "27055" "19038" "14388" "14860" ...
 $ ES.NMH.2               :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "ES.NMH.2  "
  .. ..@ desc      : chr "SMALL  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr(0) 
  .. ..@ identifier: chr "12228720"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "list"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:135] "22601" "226442" "13990" "21677" ...
 $ FH.1                   :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "FH.1  "
  .. ..@ desc      : chr "UP  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr "LOF"
  .. ..@ identifier: chr "16319128"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "raw"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:111] "6252" "23314" "1400" "9588" ...
 $ FH.1                   :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "FH.1  "
  .. ..@ desc      : chr "DOWN  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr "LOF"
  .. ..@ identifier: chr "16319128"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "raw"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:89] "5919" "3983" "7026" "4920" ...
 $ HGF.2                  :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "HGF.2  "
  .. ..@ desc      : chr "UP  "
  .. ..@ source    : chr "EBI"
  .. ..@ design    : chr(0) 
  .. ..@ identifier: chr "E-MEXP-256"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "raw"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:73] "5688" "AFFX-BioC-3_st" "AFFX-DapX-M" "10471" ...
 $ HGF.2                  :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "HGF.2  "
  .. ..@ desc      : chr "DOWN  "
  .. ..@ source    : chr "EBI"
  .. ..@ design    : chr(0) 
  .. ..@ identifier: chr "E-MEXP-256"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "raw"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:127] "3074" "10418" "7846" "24138" ...
 $ HYPEROXIA.1            :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "HYPEROXIA.1  "
  .. ..@ desc      : chr "UP  "
  .. ..@ source    : chr "GEO"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "GSE489"
  .. ..@ species   : chr "rat"
  .. ..@ data      : chr "raw"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:47] "80270" "8705" "8822" "1953" ...
 $ HYPEROXIA.1            :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "HYPEROXIA.1  "
  .. ..@ desc      : chr "DOWN  "
  .. ..@ source    : chr "GEO"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "GSE489"
  .. ..@ species   : chr "rat"
  .. ..@ data      : chr "raw"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:35] "56288" "4973" "406" "1316" ...
 $ HYPEROXIA.2            :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "HYPEROXIA.2  "
  .. ..@ desc      : chr "UP  "
  .. ..@ source    : chr "GEO"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "GSE489"
  .. ..@ species   : chr "rat"
  .. ..@ data      : chr "raw"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:43] "2819" "26515" "27040" "133418" ...
 $ HYPEROXIA.2            :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "HYPEROXIA.2  "
  .. ..@ desc      : chr "DOWN  "
  .. ..@ source    : chr "GEO"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "GSE489"
  .. ..@ species   : chr "rat"
  .. ..@ data      : chr "raw"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:38] "56288" "4973" "1958" "22872" ...
 $ HYPOXIA.1              :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "HYPOXIA.1  "
  .. ..@ desc      : chr "UP.big  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "16417408"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "list"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:105] "5792" "10144" "665" "8553" ...
 $ HYPOXIA.1              :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "HYPOXIA.1  "
  .. ..@ desc      : chr "UP.small  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "16417408"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "list"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:174] "84286" "5792" "339005" "10144" ...
 $ HYPOXIA.1              :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "HYPOXIA.1  "
  .. ..@ desc      : chr "DOWN  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "16417408"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "list"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:380] "9919" "5999" "7057" "132241" ...
 $ MET.3                  :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "MET.3  "
  .. ..@ desc      : chr "up  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr(0) 
  .. ..@ identifier: chr "16710476"
  .. ..@ species   : chr "mouse"
  .. ..@ data      : chr "list"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:84] "51763" "7169" "7412" "2639" ...
 $ Chromosomal Instability:Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "Chromosomal Instability"
  .. ..@ desc      : chr "change  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr "DELTA"
  .. ..@ identifier: chr "16921376"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "list"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:69] "9918" "891" "3014" "991" ...
 $ NFKB1.2                :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "NFKB1.2  "
  .. ..@ desc      : chr "down  "
  .. ..@ source    : chr "GEO"
  .. ..@ design    : chr "LOF"
  .. ..@ identifier: chr "GSE2624"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "processed"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:88] "223117" "6035" "9693" "8289" ...
 $ NFKB1.2                :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "NFKB1.2  "
  .. ..@ desc      : chr "up  "
  .. ..@ source    : chr "GEO"
  .. ..@ design    : chr "LOF"
  .. ..@ identifier: chr "GSE2624"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "processed"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:71] "360" "3321" "9603" "8869" ...
 $ TNF.2                  :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "TNF.2  "
  .. ..@ desc      : chr "down  "
  .. ..@ source    : chr "GEO"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "GSE2624"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "processed"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:54] "9708" "9603" "23109" "4661" ...
 $ TNF.2                  :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "TNF.2  "
  .. ..@ desc      : chr "up  "
  .. ..@ source    : chr "GEO"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "GSE2624"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "processed"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:105] "667" "223117" "9693" "1475" ...
 $ TNF.1                  :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "TNF.1  "
  .. ..@ desc      : chr "up  "
  .. ..@ source    : chr "GEO"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "GSE2489"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "raw"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:75] "4318" "6648" "7128" "50486" ...
 $ TNF.1                  :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "TNF.1  "
  .. ..@ desc      : chr "down  "
  .. ..@ source    : chr "GEO"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "GSE2489"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "raw"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:75] "AFFX-CreX-5" "AFFX-CreX-3" "AFFX-BioDn-5" "AFFX-BioC-3" ...
 $ NFKB1.1                :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "NFKB1.1  "
  .. ..@ desc      : chr "up  "
  .. ..@ source    : chr "GEO"
  .. ..@ design    : chr "LOF"
  .. ..@ identifier: chr "GSE2489"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "raw"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:75] "AFFX-CreX-5" "AFFX-CreX-3" "AFFX-BioDn-5" "AFFX-BioC-3" ...
 $ NFKB1.1                :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "NFKB1.1  "
  .. ..@ desc      : chr "down  "
  .. ..@ source    : chr "GEO"
  .. ..@ design    : chr "LOF"
  .. ..@ identifier: chr "GSE2489"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "raw"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:75] "3858" "3848" "3486" "771" ...
 $ VEGF.1                 :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "VEGF.1  "
  .. ..@ desc      : chr "up  "
  .. ..@ source    : chr "GEO"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "GDS495"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "processed"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:79] "10609" "670" "200316" "142678" ...
 $ VEGF.1                 :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "VEGF.1  "
  .. ..@ desc      : chr "down  "
  .. ..@ source    : chr "GEO"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "GDS495"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "processed"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:104] "51690" "3904" "3356" "2537" ...
 $ WND.1                  :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "WND.1  "
  .. ..@ desc      : chr "UP  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "14737219"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "list"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:123] "81611" "580" "332" "675" ...
 $ WND.1                  :Formal class 'smc' [package "PGSEA"] with 10 slots
  .. ..@ reference : chr "WND.1  "
  .. ..@ desc      : chr "DOWN  "
  .. ..@ source    : chr "PubMed"
  .. ..@ design    : chr "GOF"
  .. ..@ identifier: chr "14737219"
  .. ..@ species   : chr "human"
  .. ..@ data      : chr "list"
  .. ..@ private   : chr "no"
  .. ..@ creator   : chr "Karl Dykema <karl.dykema@vai.org>"
  .. ..@ ids       : chr [1:149] "262" "55608" "535" "8313" ...
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>


Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO