R: Protemics Standard Initiative Common QUery InterfaCe
PSICQUIC-package
R Documentation
Protemics Standard Initiative Common QUery InterfaCe
Description
This package provides a simple functional interface to the rich
resources of the PSICQUIC, the HUPO Proteomics Standard
Initiative (HUPO-PSI) project to offer programmatic access to molecular
interaction databases.
There are two classes in the package:
PSICQUIC
provides the query
interface via the interactions method, whose results are
returned in a data.frame; and IDMapper
adds gene symbol and entrez geneIDs to the PSICQUIC results data.frame,
for easier interpretation and subsequent use.
Author(s)
Paul Shannon<pshannon@fhcrc.org>
References
http://code.google.com/p/psicquic/
Aranda, Bruno, et al. "PSICQUIC and PSISCORE: accessing and scoring molecular interactions." Nature methods 8.7 (2011): 528-529.