Empirical correlation matrix

Description

Empirical/kinship correlation matrix between individuals. This correlation matrix can be calculated based on the familial relationship between individuals or large-scale SNP data by omic data analysis toolkit FQLS. The free software FQLS can be downloaded from http://biostat.cau.ac.kr/fqls/. If correlation matrix is estimated with the large-scale SNP data, the proposed method becomes robust under the presence of population substructure.

Author(s)

Meiling Liu

References

FQLS http://biostat.cau.ac.kr/fqls/

Examples

data(phi)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(PedCNV)
Loading required package: Rcpp
Loading required package: RcppArmadillo
Loading required package: ggplot2
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/PedCNV/phi.Rd_%03d_medium.png", width=480, height=480)
> ### Name: phi
> ### Title: Empirical correlation matrix
> ### Aliases: phi
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(phi)
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> 
> 
> 
> dev.off()
null device 
          1 
>