A reaction is an independent chemical reaction corresponding for example to a
well in a 96 well plate, a capillary in a rotor, a through-hole on an array,
etc. Inherits: rdmlBaseType.
Usage
reactType
Format
An R6Class generator object.
Details
The ID of this reaction
Schemas :
rotor : assign IDs according to the position of the
sample on the rotor (1 for the 1st sample, 2 for the 2nd, ...)
plate
(96/384/1536 well) : the IDs are assigned in a row-first/column-second
manner. For each row, the samples are numbered according to the increasing
column number. At the end of a row, the numbering starts at the first column
of the next row. An example for this type of plate can be found below :
1
2
3
...
A
1
2
3
B
13
14
...
or
1
2
3
...
1
1
2
3
2
13
14
...
multi-array plate (BioTrove) : the IDs are assigned in a
row-first/column-second manner, ignoring the organisation of sub-arrays. For
each row, the samples are numbered according to the increasing column number.
At the end of a row, the the next row. An example for this type of plate can
be found below : todo...
Initialization
reactType$new(id, sample, data = NULL)
Fields
id
reactIdType. See 'Details'.
sample
idReferencesType. SampleID - A reference to a
sample.
data
list of dataType.
Methods
AsDataFrame(dp.type =
"adp")
Represents amplification (dp.type = "adp") or melting
(dp.type = "mdp") data points of all targets as one
data.frame
Position(pcrformat)
Converts react
id to thew human readable form (i.e. '13' -> 'B1'). pcrFormat is
pcrFormatType. Only for 'ABC' '123' format!
providing 
.