RRHO comparison data sets.

Description

RRHO comparison data sets. See references for details.

Usage

data(lists)

Format

Three data frames: HNP, My and Sestan. Each is a data.frame with gene identifiers and sorting values so that they can be used as inputes to RRHOComparison.

References

Stein JL*, de la Torre-Ubieta L*, Tian Y, Parikshak NN, Hernandez IA, Marchetto MC, Baker DK, Lu D, Lowe JK, Wexler EM, Muotri AR, Gage FH, Kosik KS, Geschwind DH. "A quantitative framework to evaluate modeling of cortical development by neural stem cells." Manuscript in press at Neuron. (*) Authors contributed equally to this work.

Examples

data(lists)
str(HNP) ; str(Sestan); str(My)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(RRHO)
Loading required package: grid
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/RRHO/HNP.Rd_%03d_medium.png", width=480, height=480)
> ### Name: HNP
> ### Title: RRHO comparison data sets.
> ### Aliases: HNP My Sestan
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(lists)
> str(HNP) ; str(Sestan); str(My)
'data.frame':	15144 obs. of  2 variables:
 $ GeneIdentifier: int  346389 1 29974 54715 2 144568 53947 51146 404744 8086 ...
 $ RankingVal    : num  -1.014 0.421 1.112 9.922 -4.893 ...
'data.frame':	15144 obs. of  2 variables:
 $ GeneIdentifier: int  346389 1 29974 54715 2 144568 53947 51146 404744 8086 ...
 $ RankingVal    : num  -0.466 0.539 0.44 7.252 -0.158 ...
'data.frame':	15144 obs. of  2 variables:
 $ GeneIdentifier: int  346389 1 29974 54715 2 144568 53947 51146 404744 8086 ...
 $ RankingVal    : num  0.258 -1.108 -0.245 -0.956 -3.451 ...
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>