Flow cytometry data to test SamSPECTRAL algorithm.

Description

This FCS file is used as demo data to illustrate SamSPECTRAL capabilities in identifying cell populations.

Usage

data(stm)

Format

The is an FCS file.

References

Zare, H. and Shooshtari, P. and Gupta, A. and Brinkman R.B: Data Reduction for Spectral Clustering to Analyse High Throughput Flow Cytometry Data. BMC Bioinformatics, 2010, 11:403.

Examples

data(stm)
   # Read data files and transform them using log transform
	data.points <- stmFSC@exprs  
	dimensions <- c(3,4,7)
	full <- log10(data.points[,dimensions])

    plot(full, pch='.')

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(SamSPECTRAL)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/SamSPECTRAL/stmFSC.Rd_%03d_medium.png", width=480, height=480)
> ### Name: stmFSC
> ### Title: Flow cytometry data to test SamSPECTRAL algorithm.
> ### Aliases: stmFSC
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(stm)
>    # Read data files and transform them using log transform
> 	data.points <- stmFSC@exprs  
> 	dimensions <- c(3,4,7)
> 	full <- log10(data.points[,dimensions])
> 
>     plot(full, pch='.')
> 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>