A Sample Data object

Description

The SGR datset consists of three data sets stored in an ExpressionSet object. These are SoxNDam, SoxN-DDam and DDam with probes located on chromosome X between 1-6000000 bp. The precomputed dataset contains precomputed objects for the bound.cutoff, compR and increasedR to save time for building the vignette.

Usage

  data(SGR)
  data(precomputed)

Format

An ExpressionSet object, with three data sets.

Examples

  data(SGR)
  data(precomputed)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(SimBindProfiles)
Loading required package: Ringo
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: RColorBrewer
Loading required package: limma

Attaching package: 'limma'

The following object is masked from 'package:BiocGenerics':

    plotMA

Loading required package: Matrix
Loading required package: grid
Loading required package: lattice
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/SimBindProfiles/SGR.Rd_%03d_medium.png", width=480, height=480)
> ### Name: SGR
> ### Title: A Sample Data object
> ### Aliases: SGR precomputed bound.cutoff compR increasedR
> ### Keywords: datasets
> 
> ### ** Examples
> 
>   data(SGR)
>   data(precomputed)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>