Genetic Investigation of ANthropometric Traits (GIANT) consortium
data contain P-values of 2.7 million SNPs with six anthropometric
traits that are well established to represent body size and shape:
height, weight, BMI, waist circumference (WC), hip
circumference(HIP). The data is downloadable from
https://www.broadinstitute.org/collaboration/giant/index.php/GIANT_consortium_data_files
We mapped SNPs on gene SAMD11. This subdata contains P values, Z
scores of SNPs mapped on gene SAMD11. It also contains correlation
among SNPs and correlation among phenotypes for demostrated example of
MTaSPUsSet test.
Usage
data(SAMD11)
References
Shungin D, Winkler TW, Croteau-Chonka DC, Ferreira T, Locke AE, Magi R,
Strawbridge R, Pers TH, Fischer K, Justice AE, Workalemahu T, Wu JM, et
al. (2015). New genetic loci link adipose and insulin biology to body
fat distribution. Nature 518: 187-196.
Examples
data(SAMD11)
## Z-scores for man
SAMD11$ZsM
## P-values for man
SAMD11$PsM
## correlation among SNPs for man
SAMD11$corSNPM
## correlation among phenotypes for man
SAMD11$corPheM