Airway smooth muscle cells

Description

Read counts per gene for airway smooth muscle cell lines RNA-Seq experiment

Usage

data("airway")

Format

RangedSummarizedExperiment

Details

For details on the gene model and read counting procedure, see the package vignette.

The dataset contains four cell lines in two conditions: control and treatment with dexamethasone.

Source

FASTQ files from SRA, phenotypic data from GEO

References

Himes BE, Jiang X, Wagner P, Hu R, Wang Q, Klanderman B, Whitaker RM, Duan Q, Lasky-Su J, Nikolos C, Jester W, Johnson M, Panettieri R Jr, Tantisira KG, Weiss ST, Lu Q. 'RNA-Seq Transcriptome Profiling Identifies CRISPLD2 as a Glucocorticoid Responsive Gene that Modulates Cytokine Function in Airway Smooth Muscle Cells.' PLoS One. 2014 Jun 13;9(6):e99625. PMID: 24926665. GEO: GSE52778.

Results