Subset of RNA editing sites in hg19...

Description

Subset of RNA editing sites in hg19

Usage

data(darned_hg19_subset500)

Details

This data set provides a subset(500 sites only) of hg19 RNA editing sites, and originally from DARNED http://darned.ucc.ie/ for the hg19 assembly.

Examples

data(darned_hg19_subset500)
darned_hg19_subset500

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(biovizBase)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/biovizBase/darned_hg19_subset500.Rd_%03d_medium.png", width=480, height=480)
> ### Name: darned_hg19_subset500
> ### Title: Subset of RNA editing sites in hg19...
> ### Aliases: darned_hg19_subset500 darned_hg19_subset500
> ### Keywords: datasets
> 
> ### ** Examples
> data(darned_hg19_subset500)
> darned_hg19_subset500
GRanges object with 500 ranges and 10 metadata columns:
        seqnames                 ranges strand |       inchr       inrna
           <Rle>              <IRanges>  <Rle> | <character> <character>
    [1]     chr5 [ 86618225,  86618225]      - |           A           I
    [2]     chr7 [ 99792382,  99792382]      - |           A           I
    [3]    chr12 [110929076, 110929076]      - |           A           I
    [4]    chr20 [ 25818128,  25818128]      - |           A           I
    [5]     chr3 [132397992, 132397992]      + |           A           I
    ...      ...                    ...    ... .         ...         ...
  [496]     chr9 [115193271, 115193271]      + |           A           I
  [497]     chr8 [145628605, 145628605]      - |           A           I
  [498]    chr11 [ 12501615,  12501615]      + |           A           I
  [499]    chr19 [ 14845136,  14845136]      - |           A           I
  [500]     chr1 [ 84980542,  84980542]      - |           A           I
                snp        gene      seqReg       exReg                  source
        <character> <character> <character> <character>             <character>
    [1]        <NA>        <NA>           O        <NA>                amygdala
    [2]        <NA>        <NA>           O        <NA>                    <NA>
    [3]        <NA>        <NA>           O        <NA>          salivary gland
    [4]        <NA>        <NA>           O        <NA>      brain, hippocampus
    [5]        <NA>        <NA>           O        <NA>         small intestine
    ...         ...         ...         ...         ...                     ...
  [496]        <NA>       HSDL2           I        <NA>              cerebellum
  [497]        <NA>       CPSF1           I        <NA> blood, adult leukocytes
  [498]        <NA>       PARVA           I        <NA>           mammary gland
  [499]        <NA>        EMR2           E           3                    <NA>
  [500]        <NA>        <NA>           O        <NA>                   liver
             ests      esta            author
        <integer> <integer>       <character>
    [1]         0         0          15342557
    [2]         0         0          15342557
    [3]         0         0          15342557
    [4]         0         0          15342557
    [5]         0         0          15342557
    ...       ...       ...               ...
  [496]         0         0          15342557
  [497]         0         0 15258596:15342557
  [498]         0         0 15258596:15342557
  [499]         0         0          15258596
  [500]         0         0          15342557
  -------
  seqinfo: 23 sequences from an unspecified genome; no seqlengths
> 
> 
> 
> 
> dev.off()
null device 
          1 
>