Gene symbols with position...

Description

Gene symbols with position

Usage

data(genesymbol)

Details

This data set provides genen symbols in human with position and starnd information, stored as GRanges object.

Examples

data(genesymbol)
head(genesymbol)
genesymbol["RBM17"]

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(biovizBase)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/biovizBase/genesymbol.Rd_%03d_medium.png", width=480, height=480)
> ### Name: genesymbol
> ### Title: Gene symbols with position...
> ### Aliases: genesymbol genesymbol
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(genesymbol)
> head(genesymbol)
GRanges object with 6 ranges and 2 metadata columns:
       seqnames               ranges strand |      symbol      ensembl_id
          <Rle>            <IRanges>  <Rle> | <character>     <character>
  A1BG    chr19 [58858174, 58864865]      - |        A1BG ENSG00000121410
   A2M    chr12 [ 9220304,  9268558]      - |         A2M ENSG00000175899
  NAT1     chr8 [18027971, 18081197]      + |        NAT1 ENSG00000171428
  NAT1     chr8 [18067618, 18081197]      + |        NAT1 ENSG00000171428
  NAT1     chr8 [18079177, 18081197]      + |        NAT1 ENSG00000171428
  NAT2     chr8 [18248755, 18258723]      + |        NAT2 ENSG00000156006
  -------
  seqinfo: 45 sequences from an unspecified genome; no seqlengths
> genesymbol["RBM17"]
GRanges object with 1 range and 2 metadata columns:
        seqnames             ranges strand |      symbol      ensembl_id
           <Rle>          <IRanges>  <Rle> | <character>     <character>
  RBM17    chr10 [6130949, 6159420]      + |       RBM17 ENSG00000134453
  -------
  seqinfo: 45 sequences from an unspecified genome; no seqlengths
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>