ideogram without cytoband information

Description

ideogram without cytoband information

Usage

data(ideo)

Details

This data set provides hg19, hg18, mm10, mm9 genome information wihout cytoband information as a lit.

Examples

data(ideo)
ideo

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(biovizBase)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/biovizBase/ideo.Rd_%03d_medium.png", width=480, height=480)
> ### Name: ideo
> ### Title: ideogram without cytoband information
> ### Aliases: ideo
> ### Keywords: datasets
> 
> ### ** Examples
> data(ideo)
> ideo
$hg19
GRanges object with 93 ranges and 0 metadata columns:
                    seqnames         ranges strand
                       <Rle>      <IRanges>  <Rle>
   [1]                  chr1 [1, 249250621]      *
   [2]                  chr2 [1, 243199373]      *
   [3]                  chr3 [1, 198022430]      *
   [4]                  chr4 [1, 191154276]      *
   [5]                  chr5 [1, 180915260]      *
   ...                   ...            ...    ...
  [89]        chrUn_gl000231     [1, 27386]      *
  [90]        chrUn_gl000229     [1, 19913]      *
  [91]                  chrM     [1, 16571]      *
  [92]        chrUn_gl000226     [1, 15008]      *
  [93] chr18_gl000207_random     [1,  4262]      *
  -------
  seqinfo: 93 sequences from hg19 genome

$hg18
GRanges object with 49 ranges and 0 metadata columns:
           seqnames         ranges strand
              <Rle>      <IRanges>  <Rle>
   [1]         chr1 [1, 247249719]      *
   [2]  chr1_random [1,   1663265]      *
   [3]        chr10 [1, 135374737]      *
   [4] chr10_random [1,    113275]      *
   [5]        chr11 [1, 134452384]      *
   ...          ...            ...    ...
  [45]  chr9_random [1,   1146434]      *
  [46]         chrM [1,     16571]      *
  [47]         chrX [1, 154913754]      *
  [48]  chrX_random [1,   1719168]      *
  [49]         chrY [1,  57772954]      *
  -------
  seqinfo: 49 sequences from hg18 genome

$mm10
GRanges object with 66 ranges and 0 metadata columns:
                   seqnames         ranges strand
                      <Rle>      <IRanges>  <Rle>
   [1]                 chr1 [1, 195471971]      *
   [2]                 chr2 [1, 182113224]      *
   [3]                 chrX [1, 171031299]      *
   [4]                 chr3 [1, 160039680]      *
   [5]                 chr4 [1, 156508116]      *
   ...                  ...            ...    ...
  [62]       chrUn_GL456396     [1, 21240]      *
  [63]       chrUn_GL456368     [1, 20208]      *
  [64]                 chrM     [1, 16299]      *
  [65] chr4_JH584292_random     [1, 14945]      *
  [66] chr4_JH584295_random     [1,  1976]      *
  -------
  seqinfo: 66 sequences from mm10 genome

$mm9
GRanges object with 35 ranges and 0 metadata columns:
           seqnames         ranges strand
              <Rle>      <IRanges>  <Rle>
   [1]         chr1 [1, 197195432]      *
   [2]         chr2 [1, 181748087]      *
   [3]         chr3 [1, 159599783]      *
   [4]         chr4 [1, 155630120]      *
   [5]         chr5 [1, 152537259]      *
   ...          ...            ...    ...
  [31]  chr8_random  [1,   849593]      *
  [32]  chr9_random  [1,   449403]      *
  [33] chrUn_random  [1,  5900358]      *
  [34]  chrX_random  [1,  1785075]      *
  [35]  chrY_random  [1, 58682461]      *
  -------
  seqinfo: 35 sequences from mm9 genome

> 
> 
> 
> 
> dev.off()
null device 
          1 
>