ideogram with cytoband information

Description

ideogram with cytoband information

Usage

data(ideoCyto)

Details

This data set provides hg19, hg18, mm10, mm9 genome information with cytoband information as a lit.

Examples

data(ideoCyto)
ideoCyto

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(biovizBase)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/biovizBase/ideoCyto.Rd_%03d_medium.png", width=480, height=480)
> ### Name: ideoCyto
> ### Title: ideogram with cytoband information
> ### Aliases: ideoCyto
> ### Keywords: datasets
> 
> ### ** Examples
> data(ideoCyto)
> ideoCyto
$hg19
GRanges object with 862 ranges and 2 metadata columns:
        seqnames               ranges strand |     name gieStain
           <Rle>            <IRanges>  <Rle> | <factor> <factor>
    [1]     chr1  [      1,  2300000]      * |   p36.33     gneg
    [2]     chr1  [2300000,  5400000]      * |   p36.32   gpos25
    [3]     chr1  [5400000,  7200000]      * |   p36.31     gneg
    [4]     chr1  [7200000,  9200000]      * |   p36.23   gpos25
    [5]     chr1  [9200000, 12700000]      * |   p36.22     gneg
    ...      ...                  ...    ... .      ...      ...
  [858]     chrY [15100000, 19800000]      * |  q11.221   gpos50
  [859]     chrY [19800000, 22100000]      * |  q11.222     gneg
  [860]     chrY [22100000, 26200000]      * |  q11.223   gpos50
  [861]     chrY [26200000, 28800000]      * |   q11.23     gneg
  [862]     chrY [28800000, 59373566]      * |      q12     gvar
  -------
  seqinfo: 24 sequences from an unspecified genome

$hg18
GRanges object with 862 ranges and 2 metadata columns:
        seqnames               ranges strand |     name gieStain
           <Rle>            <IRanges>  <Rle> | <factor> <factor>
    [1]     chr1  [      1,  2300000]      * |   p36.33     gneg
    [2]     chr1  [2300000,  5300000]      * |   p36.32   gpos25
    [3]     chr1  [5300000,  7100000]      * |   p36.31     gneg
    [4]     chr1  [7100000,  9200000]      * |   p36.23   gpos25
    [5]     chr1  [9200000, 12600000]      * |   p36.22     gneg
    ...      ...                  ...    ... .      ...      ...
  [858]     chrY [14300000, 19000000]      * |  q11.221   gpos50
  [859]     chrY [19000000, 21300000]      * |  q11.222     gneg
  [860]     chrY [21300000, 25400000]      * |  q11.223   gpos50
  [861]     chrY [25400000, 27200000]      * |   q11.23     gneg
  [862]     chrY [27200000, 57772954]      * |      q12     gvar
  -------
  seqinfo: 24 sequences from an unspecified genome

$mm10
GRanges object with 403 ranges and 2 metadata columns:
        seqnames               ranges strand |     name gieStain
           <Rle>            <IRanges>  <Rle> | <factor> <factor>
    [1]     chr1 [       1,  8840440]      * |      qA1  gpos100
    [2]     chr1 [ 8840440, 12278390]      * |      qA2     gneg
    [3]     chr1 [12278390, 20136559]      * |      qA3   gpos33
    [4]     chr1 [20136559, 22101102]      * |      qA4     gneg
    [5]     chr1 [22101102, 30941543]      * |      qA5  gpos100
    ...      ...                  ...    ... .      ...      ...
  [399]     chrY [45298944, 54473414]      * |      qC1  gpos100
  [400]     chrY [54473414, 61927671]      * |      qC2   gpos33
  [401]     chrY [61927671, 72248949]      * |      qC3  gpos100
  [402]     chrY [72248949, 83143632]      * |       qD   gpos33
  [403]     chrY [83143632, 91744698]      * |       qE   gpos66
  -------
  seqinfo: 21 sequences from an unspecified genome

$mm9
GRanges object with 403 ranges and 2 metadata columns:
        seqnames               ranges strand |     name gieStain
           <Rle>            <IRanges>  <Rle> | <factor> <factor>
    [1]     chr1 [       1,  8918386]      * |      qA1  gpos100
    [2]     chr1 [ 8918386, 12386647]      * |      qA2     gneg
    [3]     chr1 [12386647, 20314102]      * |      qA3   gpos33
    [4]     chr1 [20314102, 22295965]      * |      qA4     gneg
    [5]     chr1 [22295965, 31214352]      * |      qA5  gpos100
    ...      ...                  ...    ... .      ...      ...
  [399]     chrY [ 7851886,  9442142]      * |      qC1  gpos100
  [400]     chrY [ 9442142, 10734224]      * |      qC2   gpos33
  [401]     chrY [10734224, 12523262]      * |      qC3  gpos100
  [402]     chrY [12523262, 14411690]      * |       qD   gpos33
  [403]     chrY [14411690, 15902555]      * |       qE   gpos66
  -------
  seqinfo: 21 sequences from an unspecified genome

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> dev.off()
null device 
          1 
>