Mapping of Ensembl mm9 genes to Affymetrix Mouse 430v2 probe sets

Description

This is a mapping of Ensembl mm9 genes to Affymetrix Mouse 430v2 probe sets. Onyl Ensembl mm9 genes that mapped at least one probe set on the array are included in the list. This mapping was created using biomaRt on 27 May 2008. Users can create this list themselves and the supplement contains the source code for doing this. For convenience sake, this object is given as a data object.

Usage

data(arrayGenesToProbeSets)

Format

a list with 14643 entries.

Details

created using biomaRt package in May 2008

Examples

data(arrayGenesToProbeSets)
head(arrayGenesToProbeSets)
table(listLen(arrayGenesToProbeSets))

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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Platform: x86_64-pc-linux-gnu (64-bit)

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> library(ccTutorial)
Loading required package: Ringo
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: RColorBrewer
Loading required package: limma

Attaching package: 'limma'

The following object is masked from 'package:BiocGenerics':

    plotMA

Loading required package: Matrix
Loading required package: grid
Loading required package: lattice
Loading required package: affy

Attaching package: 'affy'

The following object is masked from 'package:Ringo':

    probes

Loading required package: topGO
Loading required package: graph
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:Matrix':

    colMeans, colSums, expand, rowMeans, rowSums

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums


Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve


groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.

Attaching package: 'topGO'

The following object is masked from 'package:IRanges':

    members

The following object is masked from 'package:grid':

    depth

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/ccTutorial/arrayGenesToProbeSets.Rd_%03d_medium.png", width=480, height=480)
> ### Name: arrayGenesToProbeSets
> ### Title: Mapping of Ensembl mm9 genes to Affymetrix Mouse 430v2 probe
> ###   sets
> ### Aliases: arrayGenesToProbeSets
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(arrayGenesToProbeSets)
> head(arrayGenesToProbeSets)
$ENSMUSG00000000001
[1] "1437225_x_at" "1428645_at"  

$ENSMUSG00000000028
[1] "1416575_at"

$ENSMUSG00000000037
[1] "1421514_a_at" "1456984_at"  

$ENSMUSG00000000049
[1] "1416677_at"

$ENSMUSG00000000056
[1] "1451678_at" "1451677_at" "1425344_at"

$ENSMUSG00000000058
[1] "1417327_at" "1425955_at"

> table(listLen(arrayGenesToProbeSets))

   1    2    3    4    5    6    7    8    9   11   12 
6252 4625 2215  977  377  133   47   12    3    1    1 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>